Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing

Zankari, Ea ; Hasman, Henrik ; Kaas, Rolf Sommer ; Seyfarth, Anne Mette ; Agersø, Yvonne ; Lund, Ole ; Larsen, Mette Voldby ; Aarestrup, Frank Møller

in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dks496), vol: 68, issue: 4, pages: 771-777, 2013

Type: Journal article - Journal article

DOI: 10.1093/jac/dks496

Extremely Drug-Resistant Salmonella enterica Serovar Senftenberg Infections in Patients in Zambia.

Hendriksen, Rene S. ; Joensen, Katrine Grimstrup ; Lukwesa-Musyani, Chileshe ; Kalondaa, Annie ; Leekitcharoenphon, Pimlapas ; Nakazwe, Ruth ; Aarestrup, Frank Møller ; Hasman, Henrik ; Mwansa, James C L

in journal: Journal of Clinical Microbiology (ISSN: 0095-1137) (DOI: http://dx.doi.org/10.1128/JCM.02227-12), vol: 51, issue: 1, pages: 284-286, 2013

Type: Journal article - Journal article

DOI: 10.1128/JCM.02227-12

Voluntary ban on cephalosporin use in Danish pig production has effectively reduced extended-spectrum cephalosporinase-producing Escherichia coli in slaughter pigs

Agersø, Yvonne ; Aarestrup, Frank Møller

in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dks427), vol: 68, issue: 3, pages: 569-572, 2013

Type: Journal article - Journal article

DOI: 10.1093/jac/dks427

External quality assurance system (EQAS) for identification of mastitis pathogens in Denmark from 2006 to 2011

Karlsmose, Susanne ; Kunstmann, L. ; Rundsten, Carsten Friis ; Krogh, K. ; Larsen, H.K.D. ; Jensen, Arne Bent ; Aarestrup, Frank Møller ; Hendriksen, Rene S.

in journal: Preventive Veterinary Medicine (ISSN: 0167-5877) (DOI: http://dx.doi.org/10.1016/j.prevetmed.2012.11.011), vol: 109, issue: 3-4, pages: 271-277, 2013

Type: Journal article - Journal article

DOI: 10.1016/j.prevetmed.2012.11.011

Prevalence and Characterization of Cephalosporin Resistance in Nonpathogenic Escherichia coli from Food-Producing Animals Slaughtered in Poland

Wasyl, Dariusz ; Hasman, Henrik ; Cavaco, Lina ; Aarestrup, Frank Møller

in journal: Microbial Drug Resistance (ISSN: 1076-6294) (DOI: http://dx.doi.org/10.1089/mdr.2011.0033), vol: 18, issue: 1, pages: 79-82, 2012

Type: Journal article - Journal article

DOI: 10.1089/mdr.2011.0033

Clonal diversity of Staphylococcus aureus originating from the small ruminants goats and sheep

Concepción Porrero, M. ; Hasman, Henrik ; Vela, Ana I. ; Fernández-Garayzábal, Jose F. ; Dominguez, Lucas ; Aarestrup, Frank Møller

in journal: Veterinary Microbiology (ISSN: 0378-1135) (DOI: http://dx.doi.org/10.1016/j.vetmic.2011.10.015), vol: 156, pages: 157-161, 2012

Type: Journal article - Journal article

DOI: 10.1016/j.vetmic.2011.10.015

Prevalence of extended-spectrum cephalosporinase (ESC)-producing Escherichia coli in Danish slaughter pigs and retail meat identified by selective enrichment and association with cephalosporin usage

Agersø, Yvonne ; Aarestrup, Frank Møller ; Pedersen, Karl ; Seyfarth, Anne Mette ; Struve, Tina ; Hasman, Henrik

in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dkr507), vol: 67, issue: 3, pages: 582-588, 2012

Type: Journal article - Journal article

DOI: 10.1093/jac/dkr507

Characterization of Isolates of Salmonella enterica Serovar Stanley, a Serovar Endemic to Asia and Associated with Travel

Hendriksen, Rene S. ; Le Hello, Simon ; Bortolaia, Valeria ; Pulsrikarn, Chaiwat ; Nielsen, Eva Møller ; Pornruangmong, Srirat ; Chaichana, Phattharaporn ; Svendsen, Christina Aaby ; Weill, François-Xavier ; Aarestrup, Frank Møller

in journal: Journal of Clinical Microbiology (ISSN: 0095-1137) (DOI: http://dx.doi.org/10.1128/JCM.05943-11), vol: 50, issue: 3, pages: 709-720, 2012

Type: Journal article - Journal article

DOI: 10.1128/JCM.05943-11

Staphylococcus aureus CC398

Price, Lance B. ; Stegger, Marc ; Hasman, Henrik ; Aziz, Maliha ; Larsen, Jesper ; Andersen, Paal Skytt ; Pearson, Talima ; Waters, Andrew E. ; Foster, Jeffrey T. ; Schupp, James ; Gillece, John ; Driebe, Elizabeth ; Liu, Cindy M. ; Springer, Burkhard ; Zdovc, Irena ; Battisti, Antonio ; Franco, Alessia ; Zmudzki, Jacek ; Schwarz, Stefan ; Butaye, Patrick ; Jouy, Eric ; Pomba, Constanca ; Porrero, M. Concepción ; Ruimy, Raymond ; Smith, Tara C. ; Robinson, D. Ashley ; Weese, J. Scott ; Arriola, Carmen Sofia ; Yu, Fangyou ; Laurent, Frederic ; Keim, Paul ; Skov, Robert ; Aarestrup, Frank Møller

in journal: mBio (ISSN: 2150-7511) (DOI: http://dx.doi.org/10.1128/mBio.00305-11), vol: 3, issue: 1, pages: e00305, 2012

Type: Journal article - Journal article

DOI: 10.1128/mBio.00305-11

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Larsen, Mette Voldby ; Cosentino, Salvatore ; Rasmussen, Simon ; Rundsten, Carsten Friis ; Hasman, Henrik ; Marvig, Rasmus Lykke ; Jelsbak, Lars ; Sicheritz-Pontén, Thomas ; Ussery, David ; Aarestrup, Frank Møller ; Lund, Ole

in journal: Journal of Clinical Microbiology (ISSN: 0095-1137) (DOI: http://dx.doi.org/10.1128/JCM.06094-11), vol: 50, issue: 4, pages: 1355-1361, 2012

Type: Journal article - Journal article

DOI: 10.1128/JCM.06094-11

SCCmec Type IX Element in Methicillin Resistant Staphylococcusaureusspa Type t337 (CC9) Isolated from Pigs and Pork in Thailand

Vestergaard, Martin ; Cavaco, Lina ; Sirichote, Pantip ; Unahalekhaka, Aekkawat ; Dangsakul, Worawat ; Svendsen, Christina Aaby ; Aarestrup, Frank Møller ; Hendriksen, Rene S.

in journal: Frontiers in Microbiology (ISSN: 1664-302X) (DOI: http://dx.doi.org/10.3389/fmicb.2012.00103), vol: 3, pages: Article 103, 2012

Type: Journal article - Journal article

DOI: 10.3389/fmicb.2012.00103

Study of methicillin resistant Staphylococcus aureus (MRSA) in Danish pigs at slaughter and in imported retail meat reveals a novel MRSA type in slaughter pigs

Agersø, Yvonne ; Hasman, Henrik ; Cavaco, Lina ; Pedersen, Karl ; Aarestrup, Frank Møller

in journal: Veterinary Microbiology (ISSN: 0378-1135) (DOI: http://dx.doi.org/10.1016/j.vetmic.2011.12.023), vol: 157, issue: 1-2, pages: 246-250, 2012

Type: Journal article - Journal article

DOI: 10.1016/j.vetmic.2011.12.023

Antimicrobial-resistant Shigella infections from Iran

Tajbakhsh, Mercedeh ; García Migura, Lourdes ; Rahbar, Mohammad ; Svendsen, Christina Aaby ; Mohammadzadeh, Mona ; Zali, Mohammad Reza ; Aarestrup, Frank Møller ; Hendriksen, Rene S.

in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dks023), vol: 67, issue: 5, pages: 1128-1133, 2012

Type: Journal article - Journal article

DOI: 10.1093/jac/dks023

Genomic variation in Salmonella enterica core genes for epidemiological typing

Leekitcharoenphon, Pimlapas ; Lukjancenko, Oksana ; Rundsten, Carsten Friis ; Aarestrup, Frank Møller ; Ussery, David

in journal: B M C Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/1471-2164-13-88), vol: 13, 2012

Type: Journal article - Journal article

DOI: 10.1186/1471-2164-13-88

Sustainable farming

Aarestrup, Frank Møller

in journal: Nature (ISSN: 0028-0836) (DOI: http://dx.doi.org/10.1038/486465a), vol: 486, issue: 7404, pages: 465-466, 2012

Type: Journal article - Journal article

DOI: 10.1038/486465a

Bedste resultat af ringtesten nogensinde

Hendriksen, Rene S. ; Kunstmann, Lars ; Jensen, Jacob Dyring ; Cavaco, Lina ; Jensen, Arne Bent ; Dahl, Heidi Kristina ; Aarestrup, Frank Møller

in journal: Dyrlægen (ISSN: 1903-153X), vol: 5, issue: 4, pages: 8-13, 2012

Type: Journal article - Journal article

Identification of acquired antimicrobial resistance genes

Zankari, Ea ; Hasman, Henrik ; Cosentino, Salvatore ; Vestergaard, Martin ; Rasmussen, Simon ; Lund, Ole ; Aarestrup, Frank Møller ; Larsen, Mette Voldby

in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dks261), vol: 67, issue: 11, pages: 2640-2644, 2012

Type: Journal article - Journal article

DOI: 10.1093/jac/dks261

Antimicrobial resistance in Salmonella spp. recovered from patients admitted to six different hospitals in Tehran, Iran from 2007 to 2008

Tajbakhsh, Mercedeh ; Hendriksen, Rene S. ; Nochi, Zahra ; Zali, Mohammad Reza ; Aarestrup, Frank Møller ; Garcia-Migura, L.

in journal: Folia Microbiologica (ISSN: 0015-5632) (DOI: http://dx.doi.org/10.1007/s12223-012-0099-4), vol: 57, pages: 91–97, 2012

Type: Journal article - Journal article

DOI: 10.1007/s12223-012-0099-4

Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes

Kaas, Rolf Sommer ; Rundsten, Carsten Friis ; Ussery, David ; Aarestrup, Frank Møller

in journal: B M C Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/1471-2164-13-577), vol: 13, issue: 1, pages: 577, 2012

Type: Journal article - Journal article

DOI: 10.1186/1471-2164-13-577

In vitro susceptibility testing of fluoroquinolone activity against Salmonella: recent changes to CLSI standards.

Humphries, R. M. ; Fang, F. C. ; Aarestrup, Frank Møller ; Hindler, J. A.

in journal: Clinical Infectious Diseases (ISSN: 1058-4838) (DOI: http://dx.doi.org/10.1093/cid/cis600), vol: 55, issue: 8, pages: 1107-1113, 2012

Type: Journal article - Journal article

DOI: 10.1093/cid/cis600