Anders Gorm Pedersen

Anders Gorm Pedersen

Professor

DTU SYSTEMBIOLOGI
Institut for Systembiologi

Center for Biological Sequence Analysis
Molecular Evolution

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 017

2800 Lyngby

Tlf.
Tlf.
Fax 45 93 15 85
E-mail gorm@cbs.dtu.dk
Hjemmeside

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Publikationer
Projekter
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DTU nyheder
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2016
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A fast and robust method for whole genome sequencing of the Aleutian Mink Disease Virus (AMDV) genome

Hagberg, Emma Elisabeth ; Krarup, Anders ; Fahnøe, Ulrik ; Larsen, Lars Erik ; Dam-Tuxen, Rebekka ; Pedersen, Anders Gorm
in journal: Journal of Virological Methods (ISSN: 0166-0934) (DOI: http://dx.doi.org/10.1016/j.jviromet.2016.03.010), vol: 234, pages: 43-51, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1016/j.jviromet.2016.03.010

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Using expected sequence features to improve basecalling accuracy of amplicon pyrosequencing data

Rask, Thomas Salhøj ; Petersen, Bent ; Chen, Donald S. ; Day, Karen P. ; Pedersen, Anders Gorm
in journal: B M C Bioinformatics (ISSN: 1471-2105) (DOI: http://dx.doi.org/10.1186/s12859-016-1032-7), vol: 17, issue: 1, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1186/s12859-016-1032-7

2015
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Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction

Fahnøe, Ulrik ; Pedersen, Anders Gorm ; Dräger, Carolin ; Orton, Richard J ; Blome, Sandra ; Höper, Dirk ; Beer, Martin ; Rasmussen, Thomas Bruun
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0140912), vol: 10, issue: 10, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: http://dx.doi.org/10.1371/journal.pone.0140912

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Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago

Rasmussen, Simon ; Allentoft, Morten Erik ; Nielsen, Kasper ; Orlando, Ludovic ; Sikora, Martin ; Sjögren, Karl-Göran ; Pedersen, Anders Gorm ; Schubert, Mikkel ; Van Dam, Alex ; Kapel, Christian Moliin Outzen ; Nielsen, Henrik Bjørn ; Brunak, Søren ; Avetisyan, Pavel ; Epimakhov, Andrey ; Khalyapin, Mikhail Viktorovich ; Gnuni, Artak ; Kriiska, Aivar ; Lasak, Irena ; Metspalu, Mait ; Moiseyev, Vyacheslav ; Gromov, Andrei ; Pokutta, Dalia ; Saag, Lehti ; Varul, Liivi ; Yepiskoposyan, Levon ; Sicheritz-Pontén, Thomas ; Foley, Robert A ; Lahr, Marta Mirazón ; Nielsen, Rasmus ; Kristiansen, Kristian ; Willerslev, Eske
in journal: Cell (ISSN: 0092-8674) (DOI: http://dx.doi.org/10.1016/j.cell.2015.10.009), vol: 163, issue: 3, pages: 571-582, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: http://dx.doi.org/10.1016/j.cell.2015.10.009

2014
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DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families

Sander, Adam F. ; Lavstsen, Thomas ; Rask, Thomas Salhøj ; Lisby, Michael ; Salanti, Ali ; Fordyce, Sarah L. ; Jespersen, Jakob S. ; Carter, Richard ; Deitsch, Kirk W. ; Theander, Thor G. ; Pedersen, Anders Gorm ; Arnot, David E.
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkt1174), vol: 42, issue: 4, pages: 2270-2281, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: http://dx.doi.org/10.1093/nar/gkt1174

 

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

Nielsen, Henrik Bjørn ; Almeida, Mathieu ; Juncker, Agnieszka ; Rasmussen, Simon ; Li, Junhua ; Sunagawa, Shinichi ; Plichta, Damian Rafal ; Gautier, Laurent ; Pedersen, Anders Gorm ; Emmanuelle, Le Chatelier ; Pelletier, Eric ; Bonde, Ida ; Nielsen, Trine ; Manichanh, Chaysavanh ; Arumugam, Manimozhiyan ; Batto, Jean-Michel ; dos Santos, Marcelo Bertalan Quintanilha ; Blom, Nikolaj ; Borruel, Natalia ; Burgdorf, Kristoffer S. ; Boumezbeur, Fouad ; Casellas, Francesc ; Doré, Joël ; Dworzynski, Piotr ; Guarner, Francisco ; Hansen, Torben ; Hildebrand, Falk ; Kaas, Rolf Sommer ; Kennedy, Sean ; Kristiansen, Karsten ; Kultima, Jens Roat ; Léonard, Pierre ; Levenez, Florence ; Lund, Ole ; Moumen, Bouziane ; Denis, Le Paslier ; Pons, Nicolas ; Pedersen, Oluf ; Prifti, Edi ; Qin, Junjie ; Raes, Jeroen ; Sørensen, Søren ; Tap, Julien ; Tims, Sebastian ; Ussery, David ; Yamada, Takuji ; Renault, Pierre ; Sicheritz-Pontén, Thomas ; Bork, Peer ; Wang, Jun ; Brunak, Søren ; Ehrlich, S. Dusko
in journal: Nature Biotechnology (ISSN: 1087-0156) (DOI: http://dx.doi.org/10.1038/nbt.2939), vol: 32, issue: 8, pages: 822-828, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: http://dx.doi.org/10.1038/nbt.2939

 

Rescue of the highly virulent classical swine fever virus strain “Koslov” from cloned cDNA and first insights into genome variations relevant for virulence

Fahnøe, Ulrik ; Pedersen, Anders Gorm ; Risager, Peter Christian ; Nielsen, Jens ; Belsham, Graham ; Höper, Dirk ; Beer, Martin ; Rasmussen, Thomas Bruun
in journal: Virology (ISSN: 0042-6822) (DOI: http://dx.doi.org/10.1016/j.virol.2014.08.021), vol: 468-470, pages: 379-387, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: http://dx.doi.org/10.1016/j.virol.2014.08.021

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Targeting the genetic complexity within adapting RNA virus populations

Fahnøe, Ulrik ; Pedersen, Anders Gorm (Supervisor) ; Rasmussen, Thomas Bruun (Main supervisor)
Technical University of Denmark, pages: 160

Type: Ph.D. thesis

Status: Published     |    År: 2014

2013
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Reconstructing the highly virulent Classical Swine Fever Virus strain Koslov

Fahnøe, Ulrik ; Pedersen, Anders Gorm ; Nielsen, Jens ; Höper, Dirk ; Beer, Martin ; Rasmussen, Thomas Bruun
Presented at:
SMBE 2013 – Annual Meeting of the Society for Molecular Biology and Evolution, 2013, Chicago, IL

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2013

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Comparison of two Next Generation sequencing platforms for full genome sequencing of Classical Swine Fever Virus

Fahnøe, Ulrik ; Pedersen, Anders Gorm ; Höper, Dirk ; Beer, Martin ; Rasmussen, Thomas Bruun
part of: ABSTRACTS, pages: 124, 2013,
Presented at:
7th Annual Meeting EPIZONE, 2013, Brussels

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2013