Nikolaus Sonnenschein

Nikolaus Sonnenschein

Senior Researcher

DTU BIOSUSTAIN
Novo Nordisk Foundation Center for Biosustainability

Technical University of Denmark

Kemitorvet

Building 220, room 225F

2800 Kgs. Lyngby

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2018
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Cameo: A Python Library for Computer Aided Metabolic Engineering and Optimization of Cell Factories

Cardoso, Joao ; Jensen, Kristian ; Lieven, Christian ; Hansen, Anne Sofie Lærke ; Kutuzova, Svetlana ; Beber, Moritz Emanuel ; Özdemir, Emre ; Herrgard, Markus ; Redestig, Nils Henning ; Sonnenschein, Nikolaus
in journal: A C S Synthetic Biology (ISSN: 2161-5063) (DOI: http://dx.doi.org/10.1021/acssynbio.7b00423), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1021/acssynbio.7b00423

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MARSI: metabolite analogues for rational strain improvement

Cardoso, Joao ; Zeidan, Ahmad A ; Jensen, Kristian ; Sonnenschein, Nikolaus ; Neves, Ana Rute ; Herrgård, Markus J
in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/bty108), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1093/bioinformatics/bty108

2017
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Systems biology solutions for biochemical production challenges

Hansen, Anne Sofie Lærke ; Lennen, Rebecca ; Sonnenschein, Nikolaus ; Herrgard, Markus
in journal: Current Opinion in Biotechnology (ISSN: 0958-1669) (DOI: http://dx.doi.org/10.1016/j.copbio.2016.11.018), vol: 45, pages: 85-91, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.copbio.2016.11.018

2016
 

Engineering an NADPH/NADPRedox Biosensor in Yeast

Zhang, Jie ; Sonnenschein, Nikolaus ; Pihl, Thomas Peter Boye ; Pedersen, Kasper Rud ; Jensen, Michael Krogh ; Keasling, Jay
in journal: A C S Synthetic Biology (ISSN: 2161-5063) (DOI: http://dx.doi.org/10.1021/acssynbio.6b00135), vol: 5, issue: 12, pages: 1546–1556, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1021/acssynbio.6b00135

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Optlang: An algebraic modeling language for mathematical optimization

Jensen, Kristian ; Cardoso, Joao ; Sonnenschein, Nikolaus
in journal: The Journal of Open Source Software (DOI: http://dx.doi.org/10.21105/joss.00139), 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.21105/joss.00139

2015
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Analysis of genetic variation and potential applications in genome-scale metabolic modeling

Cardoso, Joao ; Andersen, Mikael Rørdam ; Herrgard, Markus ; Sonnenschein, Nikolaus
in journal: Frontiers in Bioengineering and Biotechnology (DOI: http://dx.doi.org/10.3389/fbioe.2015.00013), vol: 3, issue: 13, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.3389/fbioe.2015.00013

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Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways

King, Zachary A. ; Draeger, Andreas ; Ebrahim, Ali ; Sonnenschein, Nikolaus ; Lewis, Nathan ; Palsson, Bernhard O.
in journal: PLoS Computational Biology (ISSN: 1553-7358) (DOI: http://dx.doi.org/10.1371/journal.pcbi.1004321), vol: 11, issue: 8, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1371/journal.pcbi.1004321

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Do genome-scale models need exact solvers or clearer standards?

Ebrahim, A. ; Almaas, E. ; Bauer, E. ; Bordbar, A. ; Burgard, A. P. ; Chang, R. L. ; Drager, A. ; Famili, I. ; Feist, A. M. ; Fleming, R. M. ; Fong, S. S. ; Hatzimanikatis, V. ; Herrgard, Markus ; Holder, A. ; Hucka, M. ; Hyduke, D. ; Jamshidi, N. ; Lee, Sang Yup ; Le Novere, N. ; Lerman, J. A. ; Lewis, Nathan ; Ma, D. ; Mahadevan, R. ; Maranas, C. ; Nagarajan, H. ; Navid, A. ; Nielsen, Jens ; Nielsen, L. K. ; Nogales, J. ; Noronha, A. ; Pal, C. ; Palsson, Bernhard ; Papin, J. A. ; Patil, Kiran R. ; Price, N. D. ; Reed, J. L. ; Saunders, M. ; Senger, R. S. ; Sonnenschein, Nikolaus ; Sun, Yuekai ; Thiele, I.
in journal: Molecular Systems Biology (ISSN: 1744-4292) (DOI: http://dx.doi.org/10.15252/msb.20156157), vol: 11, issue: 10, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.15252/msb.20156157

 

Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics

Bordbar, Aarash ; McCloskey, Douglas ; Zielinski, Daniel C ; Sonnenschein, Nikolaus ; Jamshidi, Neema ; Palsson, Bernhard
in journal: Cell Systems (DOI: http://dx.doi.org/10.1016/j.cels.2015.10.003), vol: 1, issue: 4, pages: 283-292, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1016/j.cels.2015.10.003

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Editorial: Current Challenges in Modeling Cellular Metabolism

Machado, Daniel ; Zhuang, Kai ; Sonnenschein, Nikolaus ; Herrgard, Markus
in journal: Frontiers in Bioengineering and Biotechnology (DOI: http://dx.doi.org/10.3389/fbioe.2015.00193), vol: 3, 2015

Type: Editorial (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.3389/fbioe.2015.00193