Jonas Nyvold Pedersen

Jonas Nyvold Pedersen

Senior Researcher

DTU NANOTECH
Department of Micro- and Nanotechnology

Technical University of Denmark

Ørsteds Plads

Building 344, room 214

2800 Kgs. Lyngby

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2016
 

New technologies for DNA analysis

McGinn, Steven ; Bauer, David ; Brefort, Thomas ; Dong, Liqin ; El-Sagheer, Afaf ; Elsharawy, Abdou ; Evans, Geraint ; Falk-Sörqvist, Elin ; Forster, Michael ; Fredriksson, Simon ; Freeman, Peter ; Freitag, Camilla ; Fritzsche, Joachim ; Gibson, Spencer ; Gullberg, Mats ; Heath, Simon ; Heath-Brun, Isabelle ; Heron, Andrew J. ; Hohlbein, Johannes ; Ke, Rongqin ; Lancaster, Owen ; Le Reste, Ludovic ; Maglia, Giovanni ; Marie, Rodolphe ; Mauger, Florence ; Mertes, Florian ; Mignardi, Marco ; Moens, Lotte ; Oostmeijer, Jelle ; Out, Ruud ; Pedersen, Jonas Nyvold ; Persson, Fredrik ; Picaud, Vincent ; Rotem, Dvir ; Schracke, Nadine ; Sengenes, Jennifer ; Stähler, Peer F. ; Stade, Björn ; Stoddart, David ; Teng, Xia ; Veal, Colin D. ; Zahra, Nathalie ; Bayley, Hagan ; Beier, Markus ; Brown, Tom ; Dekker, Cees ; Ekström, Björn ; Flyvbjerg, Henrik ; Franke, Andre ; Guenther, Simone ; Kapanidis, Achillefs N. ; Kaye, Jane ; Kristensen, Anders ; Lehrach, Hans ; Mangion, Jonathan ; Sauer, Sascha ; Schyns, Emile ; Tost, Jörg ; van Helvoort, Joop M.L.M. ; van der Zaag, Pieter J. ; Tegenfeldt, Jonas O. ; Brookes, Anthony J. ; Mir, Kalim ; Nilsson, Mats ; Willcocks, Spike ; Gut, Ivo G.
in journal: New Biotechnology (ISSN: 1871-6784) (DOI: http://dx.doi.org/10.1016/j.nbt.2015.10.003), vol: 33, issue: 3, pages: 311-330, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1016/j.nbt.2015.10.003

  PDF

How to determine local stretching and tension in a flow-stretched DNA molecule

Pedersen, Jonas Nyvold ; Marie, Rodolphe ; Kristensen, Anders ; Flyvbjerg, Henrik
in journal: Physical Review E (ISSN: 1539-3755) (DOI: http://dx.doi.org/10.1103/PhysRevE.93.042405), vol: 93, issue: 4, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1103/PhysRevE.93.042405

2015
  PDF

Concentrating Genomic Length DNA in a Microfabricated Array

Chen, Yu ; Abrams, Ezra S. ; Boles, T. Christian ; Pedersen, Jonas Nyvold ; Flyvbjerg, Henrik ; Austin, Robert H. ; Sturm, James C.
in journal: Physical Review Letters (ISSN: 0031-9007) (DOI: http://dx.doi.org/10.1103/PhysRevLett.114.198303), vol: 114, issue: 19, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1103/PhysRevLett.114.198303

 

Estimation of motility parameters from trajectory data

Vestergaard, Christian L. ; Pedersen, Jonas Nyvold ; Mortensen, Kim ; Flyvbjerg, Henrik
in journal: European Physical Journal. Special Topics (ISSN: 1951-6355) (DOI: http://dx.doi.org/10.1140/epjst/e2015-02452-5), vol: 224, issue: 7, pages: 1151-1168, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1140/epjst/e2015-02452-5

  PDF

Optical mapping of single-molecule human DNA in disposable, mass-produced all-polymer

Østergaard, Peter Friis ; Lopacinska-Jørgensen, Joanna ; Pedersen, Jonas Nyvold ; Tommerup, Niels ; Kristensen, Anders ; Flyvbjerg, Henrik ; Silahtaroglu, Asli ; Marie, Rodolphe ; Taboryski, Rafael J.
in journal: Journal of Micromechanics and Microengineering (ISSN: 0960-1317) (DOI: http://dx.doi.org/10.1088/0960-1317/25/10/105002), vol: 25, pages: 105002, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1088/0960-1317/25/10/105002

2014
  PDF

Nanofluidics to Enhance Single Molecule DNA Imaging

Bauer, David L. V. ; Marie, Rodolphe ; Pedersen, Jonas Nyvold ; Rasmussen, Kristian Hagsted ; Yusuf, Mohammed ; Volpi, Emanuela ; Flyvbjerg, Henrik ; Kristensen, Anders ; Mir, Kalim U.
in journal: BIOPHYSICAL JOURNAL (ISSN: 0006-3495), vol: 106, issue: 2, pages: 395A, 2014
Presented at:
58th Annual Meeting of the Biophysical-Society , 2014, San Fransisco

Type: Conference abstract in journal (Peer reviewed)

Status: Published     |    Year: 2014

  PDF

Thermophoretic forces on DNA measured with a single-molecule spring balance

Pedersen, Jonas Nyvold ; Lüscher, Christopher James ; Marie, Rodolphe ; Thamdrup, Lasse Højlund ; Kristensen, Anders ; Flyvbjerg, Henrik
in journal: Physical Review Letters (ISSN: 0031-9007) (DOI: http://dx.doi.org/10.1103/PhysRevLett.113.268301), vol: 113, issue: 26, pages: 268301, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2014     |    DOI: http://dx.doi.org/10.1103/PhysRevLett.113.268301

2013
 

A diagrammatic description of the equations of motion, current and noise within the second-order von Neumann approach

Karlstrom, O. ; Emary, C. ; Zedler, P. ; Pedersen, Jonas Nyvold ; Bergenfeldt, C. ; Samuelsson, P. ; Brandes, T. ; Wacker, A.
in journal: Journal of Physics A: Mathematical and Theoretical (ISSN: 1751-8113) (DOI: http://dx.doi.org/10.1088/1751-8113/46/6/065301), vol: 46, issue: 6, 2013

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2013     |    DOI: http://dx.doi.org/10.1088/1751-8113/46/6/065301

 

Fully Streched Single DNA Molecules in a Nanofluidic Chip Show Large-Scale Structural Variation

Pedersen, Jonas Nyvold ; Marie, Rodolphe ; Bauer, D. L. ; Rasmussen, Kristian Hagsted ; Yusuf, Mohamed Adan ; Volpi, E. V. ; Kristensen, Anders ; Mir, K. U. ; Flyvbjerg, Henrik
in journal: Biophysical Journal (ISSN: 0006-3495), vol: 104, issue: 2; SUPP/1, pages: 175a, 2013

Type: Comment/debate (Peer reviewed)

Status: Published     |    Year: 2013

 

Integrated view of genome structure and sequence of a single DNA molecule in a nanofluidic device

Marie, Rodolphe ; Pedersen, Jonas Nyvold ; L. V. Bauer, David ; Rasmussen, Kristian Hagsted ; Yusuf, Mohammed ; Volpi, Emanuela ; Flyvbjerg, Henrik ; Kristensen, Anders ; U. Mirb, Kalim
in journal: National Academy of Sciences. Proceedings (ISSN: 0027-8424) (DOI: http://dx.doi.org/10.1073/pnas.1214570110), vol: 110, issue: 13, pages: 4893-4898, 2013

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2013     |    DOI: http://dx.doi.org/10.1073/pnas.1214570110