Jonas Nyvold Pedersen

Jonas Nyvold Pedersen

Associate Professor

DTU NANOTECH
Department of Micro- and Nanotechnology

Technical University of Denmark

Ørsteds Plads

Building 344, room 214

2800 Kgs. Lyngby

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2018
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Concentrating and labeling genomic DNA in a nanofluidic array

Marie, Rodolphe ; Pedersen, Jonas Nyvold ; Mir, Kalim U. ; Bilenberg, Brian ; Kristensen, Anders
in journal: Nanoscale (ISSN: 2040-3364) (DOI: http://dx.doi.org/10.1039/c7nr06016e), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1039/c7nr06016e

2017
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Classification of DNA nucleotides with transverse tunneling currents

Pedersen, Jonas Nyvold ; Boynton, Paul ; Ventra, Massimiliano Di ; Jauho, Antti-Pekka ; Flyvbjerg, Henrik
in journal: Nanotechnology (ISSN: 0957-4484) (DOI: http://dx.doi.org/10.1088/0957-4484/28/1/015502), vol: 28, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1088/0957-4484/28/1/015502

 

Photothermal Transport of DNA in Entropy-Landscape Plasmonic Waveguides

Smith, Cameron ; Thilsted, Anil Haraksingh ; Pedersen, Jonas Nyvold ; Youngman, Tomas Hugh ; Dyrnum, Julia C. ; Michaelsen, Nicolai A. ; Marie, Rodolphe ; Kristensen, Anders
in journal: A C S Nano (ISSN: 1936-0851) (DOI: http://dx.doi.org/10.1021/acsnano.6b08563), pages: 4553-4563, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1021/acsnano.6b08563

 

QmeQ 1.0: An open-source Python package for calculations of transport through quantum dot devices

Kiršanskas, Gediminas ; Pedersen, Jonas Nyvold ; Karlström, Olov ; Leijnse, Martin Christian ; Wacker, Andreas
in journal: Computer Physics Communications (ISSN: 0010-4655) (DOI: http://dx.doi.org/10.1016/j.cpc.2017.07.024), vol: 221, pages: 317-342, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.cpc.2017.07.024

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Enrichment of megabase-sized DNA molecules for single-molecule optical mapping and next-generation sequencing

Łopacińska-Jørgensen, Joanna M ; Pedersen, Jonas Nyvold ; Bak, Mads ; Mehrjouy, Mana M. ; Sørensen, Kristian Tølbøl ; Østergaard, Peter Friis ; Bilenberg, Brian ; Kristensen, Anders ; Taboryski, Rafael J. ; Flyvbjerg, Henrik ; Marie, Rodolphe ; Tommerup, Niels ; Silahtaroglu, Asli
in journal: Scientific Reports (ISSN: 2045-2322) (DOI: http://dx.doi.org/10.1038/s41598-017-18091-6), vol: 7, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/s41598-017-18091-6

2016
 

New technologies for DNA analysis

McGinn, Steven ; Bauer, David ; Brefort, Thomas ; Dong, Liqin ; El-Sagheer, Afaf ; Elsharawy, Abdou ; Evans, Geraint ; Falk-Sörqvist, Elin ; Forster, Michael ; Fredriksson, Simon ; Freeman, Peter ; Freitag, Camilla ; Fritzsche, Joachim ; Gibson, Spencer ; Gullberg, Mats ; Heath, Simon ; Heath-Brun, Isabelle ; Heron, Andrew J. ; Hohlbein, Johannes ; Ke, Rongqin ; Lancaster, Owen ; Le Reste, Ludovic ; Maglia, Giovanni ; Marie, Rodolphe ; Mauger, Florence ; Mertes, Florian ; Mignardi, Marco ; Moens, Lotte ; Oostmeijer, Jelle ; Out, Ruud ; Pedersen, Jonas Nyvold ; Persson, Fredrik ; Picaud, Vincent ; Rotem, Dvir ; Schracke, Nadine ; Sengenes, Jennifer ; Stähler, Peer F. ; Stade, Björn ; Stoddart, David ; Teng, Xia ; Veal, Colin D. ; Zahra, Nathalie ; Bayley, Hagan ; Beier, Markus ; Brown, Tom ; Dekker, Cees ; Ekström, Björn ; Flyvbjerg, Henrik ; Franke, Andre ; Guenther, Simone ; Kapanidis, Achillefs N. ; Kaye, Jane ; Kristensen, Anders ; Lehrach, Hans ; Mangion, Jonathan ; Sauer, Sascha ; Schyns, Emile ; Tost, Jörg ; van Helvoort, Joop M.L.M. ; van der Zaag, Pieter J. ; Tegenfeldt, Jonas O. ; Brookes, Anthony J. ; Mir, Kalim ; Nilsson, Mats ; Willcocks, Spike ; Gut, Ivo G.
in journal: New Biotechnology (ISSN: 1871-6784) (DOI: http://dx.doi.org/10.1016/j.nbt.2015.10.003), vol: 33, issue: 3, pages: 311-330, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1016/j.nbt.2015.10.003

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How to determine local stretching and tension in a flow-stretched DNA molecule

Pedersen, Jonas Nyvold ; Marie, Rodolphe ; Kristensen, Anders ; Flyvbjerg, Henrik
in journal: Physical Review E (ISSN: 1539-3755) (DOI: http://dx.doi.org/10.1103/PhysRevE.93.042405), vol: 93, issue: 4, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1103/PhysRevE.93.042405

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Comment on “Temporal Correlations of the Running Maximum of a Brownian Trajectory”

Mortensen, Kim ; Pedersen, Jonas Nyvold
in journal: Physical Review Letters (ISSN: 0031-9007) (DOI: http://dx.doi.org/10.1103/PhysRevLett.117.248901), vol: 117, issue: 24, 2016

Type: Comment/debate (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1103/PhysRevLett.117.248901

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How to connect time-lapse recorded trajectories of motile microorganisms with dynamical models in continuous time

Pedersen, Jonas Nyvold ; Li, Liang ; Gradinaru, Cristian ; Austin, Robert H. ; Cox, Edward C. ; Flyvbjerg, Henrik
in journal: Physical Review E (ISSN: 1539-3755) (DOI: http://dx.doi.org/10.1103/PhysRevE.94.062401), vol: 94, issue: 6, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1103/PhysRevE.94.062401

2015
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Concentrating Genomic Length DNA in a Microfabricated Array

Chen, Yu ; Abrams, Ezra S. ; Boles, T. Christian ; Pedersen, Jonas Nyvold ; Flyvbjerg, Henrik ; Austin, Robert H. ; Sturm, James C.
in journal: Physical Review Letters (ISSN: 0031-9007) (DOI: http://dx.doi.org/10.1103/PhysRevLett.114.198303), vol: 114, issue: 19, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1103/PhysRevLett.114.198303