Christopher Workman

Christopher Workman

Associate Professor

DTU SYSTEMS BIOLOGY
Department of Systems Biology

Center for Biological Sequence Analysis
Regulatory Genomics

Technical University of Denmark

Kemitorvet

Building 208, room 014

2800 Kgs. Lyngby

Ph.
Ph.
Fax +45 45 93 15 85
E-mail cwor@dtu.dk
ORCID 0000-0002-2210-3743
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2016
 

Quantification of oxidative stress phenotypes based on high-throughput growth profiling of protein kinase and phosphatase knockouts

Altıntaş, Ali ; Martini, Jacopo ; Mortensen, Uffe Hasbro ; Workman, Christopher
in journal: Fems Yeast Research (ISSN: 1567-1356) (DOI: http://dx.doi.org/10.1093/femsyr/fov101), vol: 16, issue: 1, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1093/femsyr/fov101

 

Obesity and Bariatric Surgery Drive Epigenetic Variation of Spermatozoa in Humans

Donkin, Ida ; Versteyhe, Soetkin ; Ingerslev, Lars R. ; Qian, Kui ; Mechta, Mie ; Nordkap, Loa ; Mortensen, Brynjulf ; Appel, Emil Vincent R ; Jørgensen, Niels ; Kristiansen, Viggo B. ; Hansen, Torben ; Workman, Christopher ; Zierath, Juleen R. ; Barrès, Romain
in journal: Cell Metabolism (ISSN: 1550-4131) (DOI: http://dx.doi.org/10.1016/j.cmet.2015.11.004), vol: 23, issue: 2, pages: 369–378, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1016/j.cmet.2015.11.004

  PDF

Strategies for structuring interdisciplinary education in Systems Biology

Cvijovic, Marija ; Höfer, Thomas ; Aćimović, Jure ; Alberghina, Lilia ; Almaas, Eivind ; Besozzi, Daniela ; Blomberg, Anders ; Bretschneider, Till ; Cascante, Marta ; Collin, Olivier ; de Atauri, Pedro ; Depner, Cornelia ; Dickinson, Robert ; Dobrzynski, Maciej ; Fleck, Christian ; Garcia-Ojalvo, Jordi ; Gonze, Didier ; Hahn, Jens ; Marie Hess, Heide ; Hollmann, Susanne ; Krantz, Marcus ; Kummer, Ursula ; Lundh, Torbjörn ; Martial, Gifta ; Martins dos Santos, Vítor ; Mauer-Oberthür, Angela ; Regierer, Babette ; Skene, Barbara ; Stalidzans, Egils ; Stelling, Jörg ; Teusink, Bas ; Workman, Christopher ; Hohmann, Stefan
in journal: Npj Systems Biology and Applications (ISSN: 2056-7189) (DOI: http://dx.doi.org/10.1038/npjsba.2016.11), vol: 2, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1038/npjsba.2016.11

2015
  PDF

Oxidative stress response pathways: Fission yeast as archetype

Papadakis, Manos A. ; Workman, Christopher
in journal: Critical Reviews in Microbiology (ISSN: 1040-841X) (DOI: http://dx.doi.org/10.3109/1040841X.2013.870968), vol: 41, issue: 4, pages: 520-535, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.3109/1040841X.2013.870968

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miR-18b overexpression identifies mantle cell lymphoma patients with poor outcome and improves the MIPI-B prognosticator

Husby, Simon ; Ralfkiær, Ulrik Methner ; Garde, Christian ; Zandi, Roza ; Ek, Sara ; Kolstad, Arne ; Jerkeman, Mats ; Laurell, Anna ; Räty, Riikka ; Pedersen, Lone B. ; Pedersen, Anja ; Ehinger, Mats ; Sundström, Christer ; Karjalainen-Lindsberg, Marja-Liisa ; Delabie, Jan ; Clasen-Linde, Erik ; Brown, Peter ; Cowland, Jack B. ; Workman, Christopher ; Geisler, Christian H. ; Grønbæk, Kirsten
in journal: Blood (ISSN: 0006-4971) (DOI: http://dx.doi.org/10.1182/blood-2014-06-584193), vol: 125, issue: 17, pages: 2669-2677, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1182/blood-2014-06-584193

  PDF

Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways

Ewald, David Adrian ; Malajian, Dana ; Krueger, James G. ; Workman, Christopher ; Wang, Tianjiao ; Tian, Suyan ; Litman, Thomas ; Guttman-Yassky, Emma ; Suárez-Fariñas, Mayte
in journal: BMC Medical Genomics (ISSN: 1755-8794) (DOI: http://dx.doi.org/10.1186/s12920-015-0133-x), vol: 8, issue: 60, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1186/s12920-015-0133-x

  PDF

Integration and visualization of non-coding RNA and protein interaction networks

Junge, Alexander ; Refsgaard, Jan Christian ; Garde, Christian ; Pan, Xiaoyong ; Santos Delgado, Alberto ; Anthon, Christian ; Alkan, Ferhat ; von Mering, Christian ; Workman, Christopher ; Jensen, Lars Juhl ; Gorodkin, Jan
Presented at:
First Annual Danish Bioinformatics Conference, 2015, Odense

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    Year: 2015

2014
 

RNA-protein interactions: an overview.

Re, Angela ; Joshi, Tejal ; Kulberkyte, Eleonora ; Morris, Quaid ; Workman, Christopher
part of: RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods (ISBN: 978-1-62703-708-2), pages: 491-521, 2014,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2014     |    DOI: http://dx.doi.org/10.1007/978-1-62703-709-9_23

  PDF

Colony morphology and transcriptome profiling of Pseudomonas putida KT2440 and its mutants deficient in alginate or all EPS synthesis under controlled matric potentials

Gülez, Gamze ; Altintas, Ali ; Fazli, Mustafa ; Dechesne, Arnaud ; Workman, Christopher ; Tolker-Nielsen, Tim ; Smets, Barth F.
in journal: MicrobiologyOpen (ISSN: 2045-8827) (DOI: http://dx.doi.org/10.1002/mbo3.180), vol: 3, issue: 4, pages: 457-469, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2014     |    DOI: http://dx.doi.org/10.1002/mbo3.180

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A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana.

Lindemose, Søren ; Jensen, Michael Krogh ; de Velde, Jan Van ; O'Shea, Charlotte ; Heyndrickx, Ken S. ; Workman, Christopher ; Vandepoele, Klaas ; Skriver, Karen ; De Masi, Federico
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gku502), vol: 42, issue: 12, pages: 7681-7693, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2014     |    DOI: http://dx.doi.org/10.1093/nar/gku502