Ole Lund

Ole Lund

Professor

DTU BIOINFORMATICS
Department of Bio and Health Informatics

Genomic Epidemiology
DTU Bioinformatics Employees

Technical University of Denmark

Kemitorvet

Building 208, room 015

2800 Kgs. Lyngby

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2017
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Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease

Joensen, Katrine Grimstrup ; Engsbro, A L Ø ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Lund, Ole ; Westh, H. ; Aarestrup, Frank Møller
in journal: European Journal of Clinical Microbiology & Infectious Diseases (ISSN: 0934-9723) (DOI: http://dx.doi.org/10.1007/s10096-017-2947-2), vol: 36, issue: 7, pages: 1325-1338, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/s10096-017-2947-2

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MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Petersen, Thomas Nordahl ; Lukjancenko, Oksana ; Thomsen, Martin Christen Frølund ; Sperotto, Maria Maddalena ; Lund, Ole ; Aarestrup, Frank Møller ; Sicheritz-Pontén, Thomas
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0176469), vol: 12, issue: 5, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0176469

 

Erratum to: Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease

Joensen, Katrine Grimstrup ; Engsbro, A. L. Ø. ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Lund, Ole ; Westh, H. ; Aarestrup, Frank Møller
in journal: European Journal of Clinical Microbiology & Infectious Diseases (ISSN: 0934-9723) (DOI: http://dx.doi.org/10.1007/s10096-017-2993-9), vol: 36, issue: 7, pages: 1339-1342, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/s10096-017-2993-9

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High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology

Nag, Sidsel ; Dalgaard, Marlene Danner ; Kofoed, Poul-Erik ; Ursing, Johan ; Crespo, Marina ; Andersen, Lee O'Brien ; Aarestrup, Frank Møller ; Lund, Ole ; Alifrangis, Michael
in journal: Scientific Reports (ISSN: 2045-2322) (DOI: http://dx.doi.org/10.1038/s41598-017-02724-x), vol: 7, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/s41598-017-02724-x

 

Development of a web tool for Escherichia coli subtyping based on fimH alleles

Roer, Louise ; Tchesnokova, Veronika ; Allesøe, Rosa Lundbye ; Muradova, Mariya ; Chattopadhyay, Sujay ; Ahrenfeldt, Johanne ; Thomsen, Martin Christen Frølund ; Lund, Ole ; Hansen, Frank ; Hammerum, Anette Marie ; Sokurenko, Evgeni ; Hasman, Henrik
in journal: Journal of Clinical Microbiology (ISSN: 0095-1137) (DOI: http://dx.doi.org/10.1128/JCM.00737-17), vol: 55, issue: 8, pages: 2538-2543, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1128/JCM.00737-17

 

The CGE Tool Box

Larsen, Mette Voldby ; Joensen, Katrine Grimstrup ; Zankari, Ea ; Ahrenfeldt, Johanne ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Roer, Louise ; Leekitcharoenphon, Pimlapas ; Saputra, Dhany ; Cosentino, S. ; Thomsen, Martin Christen Frølund ; Bellod Cisneros, Jose Luis ; Jurtz, Vanessa Isabell ; Rasmussen, Simon ; Petersen, Thomas Nordahl ; Hasman, Henrik ; Sicheritz-Pontén, Thomas ; Aarestrup, Frank Møller ; Lund, Ole
part of: Applied Genomics of Foodborne Pathogens, pages: 65-90, 2017, Springer, Switzerland

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/978-3-319-43751-4_5

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Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Sibbesen, Jonas Andreas ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine González-Izarzugaza ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben N. ; Friborg, Rune M. ; Halager, Anders E. ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngreen, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Syed, Ali ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Börglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in journal: Nature (ISSN: 0028-0836) (DOI: http://dx.doi.org/10.1038/nature23264), vol: 548, pages: 87-91, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/nature23264

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Cross-recognition of a pit viper (Crotalinae) polyspecific antivenom explored through high-density peptide microarray epitope mapping

Engmark, Mikael ; Lomonte, Bruno ; Gutiérrez, José María ; Laustsen, Andreas Hougaard ; De Masi, Federico ; Andersen, Mikael Rørdam ; Lund, Ole
in journal: P L o S Neglected Tropical Diseases (Print) (ISSN: 1935-2727) (DOI: http://dx.doi.org/10.1371/journal.pntd.0005768), vol: 11, issue: 7, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pntd.0005768

 

High-density peptide microarray exploration of the antibody response in a rabbit immunized with a neurotoxic venom fraction

Engmark, Mikael ; Jespersen, Martin Closter ; Lomonte, Bruno ; Lund, Ole ; Laustsen, Andreas Hougaard
in journal: Toxicon (ISSN: 0041-0101) (DOI: http://dx.doi.org/10.1016/j.toxicon.2017.08.028), vol: 138, pages: 151-158, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.toxicon.2017.08.028

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PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens

Zankari, Ea ; Allesøe, Rosa Lundbye ; Joensen, Katrine Grimstrup ; Cavaco, Lina ; Lund, Ole ; Aarestrup, Frank Møller
in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dkx217), vol: 72, issue: 10, pages: 2764-2768, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/jac/dkx217