Ole Lund

Ole Lund

Professor

DTU BIOINFORMATICS
Department of Bio and Health Informatics

Genomic Epidemiology
DTU Bioinformatics Employees

Technical University of Denmark

Kemitorvet

Building 208, room 015

2800 Kgs. Lyngby

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2017
 

The CGE Tool Box

Larsen, Mette Voldby ; Joensen, Katrine Grimstrup ; Zankari, Ea ; Ahrenfeldt, Johanne ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Roer, Louise ; Leekitcharoenphon, Pimlapas ; Saputra, Dhany ; Cosentino, S. ; Thomsen, Martin Christen Frølund ; Bellod Cisneros, Jose Luis ; Jurtz, Vanessa Isabell ; Rasmussen, Simon ; Petersen, Thomas Nordahl ; Hasman, Henrik ; Sicheritz-Pontén, Thomas ; Aarestrup, Frank Møller ; Lund, Ole
part of: Applied Genomics of Foodborne Pathogens, pages: 65-90, 2017, Springer, Switzerland

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/978-3-319-43751-4_5

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Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Sibbesen, Jonas Andreas ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine González-Izarzugaza ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben N. ; Friborg, Rune M. ; Halager, Anders E. ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngreen, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Syed, Ali ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Börglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in journal: Nature (ISSN: 0028-0836) (DOI: http://dx.doi.org/10.1038/nature23264), vol: 548, pages: 87-91, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/nature23264

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Cross-recognition of a pit viper (Crotalinae) polyspecific antivenom explored through high-density peptide microarray epitope mapping

Engmark, Mikael ; Lomonte, Bruno ; Gutiérrez, José María ; Laustsen, Andreas Hougaard ; De Masi, Federico ; Andersen, Mikael Rørdam ; Lund, Ole
in journal: P L o S Neglected Tropical Diseases (Print) (ISSN: 1935-2727) (DOI: http://dx.doi.org/10.1371/journal.pntd.0005768), vol: 11, issue: 7, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pntd.0005768

 

High-density peptide microarray exploration of the antibody response in a rabbit immunized with a neurotoxic venom fraction

Engmark, Mikael ; Jespersen, Martin Closter ; Lomonte, Bruno ; Lund, Ole ; Laustsen, Andreas Hougaard
in journal: Toxicon (ISSN: 0041-0101) (DOI: http://dx.doi.org/10.1016/j.toxicon.2017.08.028), vol: 138, pages: 151-158, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.toxicon.2017.08.028

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PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens

Zankari, Ea ; Allesøe, Rosa Lundbye ; Joensen, Katrine Grimstrup ; Cavaco, Lina ; Lund, Ole ; Aarestrup, Frank Møller
in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dkx217), vol: 72, issue: 10, pages: 2764-2768, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/jac/dkx217

 

Modifications of TIGIT expression contribute to CD8 T cell exhaustion in chronic virus infection

Tauriainen, Johanna ; Scharf, Lydia ; Frederiksen, Juliet Wairimu ; Naji, Ali ; Ljunggren, Hans-Gustaf ; Sonnerborg, Anders ; Lund, Ole ; Reyes-Teran, Gustavo ; Hecht, Frederick M. ; Deeks, Steven G. ; Betts, Michael R. ; Buggert, Marcus ; Karlsson, Annika C.
in journal: Scandinavian Journal of Immunology (ISSN: 0300-9475), vol: 86, issue: 4, pages: 318, 2017
Presented at:
44th Annual Meeting of the Scandinavian Society of Immunology, 2017, Stockholm

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017

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Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

Gonzalez-Izarzugaza, Jose Maria ; Skov, Laurits ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Andreas Sibbesen, Jonas ; Liu, Siyang ; Villesen, Palle ; Belling, Kirstine González-Izarzugaza ; Theil Have, Christian ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben ; Friborg, Rune M. ; Halager, Anders E. ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Qaswar Ali Shah, Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in journal: P L o S Genetics (ISSN: 1553-7390) (DOI: http://dx.doi.org/10.1371/journal.pgen.1006834), vol: 13, issue: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pgen.1006834

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RUCS: Rapid identification of PCR primers for unique core sequences

Thomsen, Martin Christen Frølund ; Hasman, Henrik ; Westh, Henrik ; Kaya, Hülya ; Lund, Ole
in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/btx526), vol: 33, issue: 24, pages: 3917-3921, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/bioinformatics/btx526

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Multidrug-resistant Neisseria gonorrhoeae infection with ceftriaxone resistance and intermediate resistance to azithromycin, Denmark, 2017

Terkelsen, David ; Tolstrup, Jacob ; Johnsen, Camilla Hundahl ; Lund, Ole ; Larsen, Helle Kiellberg ; Worning, Peder ; Unemo, Magnus ; Westh, Henrik
in journal: Eurosurveillance (Print) (ISSN: 1025-496X) (DOI: http://dx.doi.org/10.2807/1560-7917.ES.2017.22.42.17-00659), vol: 22, issue: 42, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.2807/1560-7917.ES.2017.22.42.17-00659

 

Hospital epidemiology of methicillin-resistant Staphylococcus aureus (MRSA) in a tertiary care hospital in Moshi Tanzania as determined by whole genome sequencing

Kumburu, H. H. ; Sonda, T. ; Leetcharoenphon, P. ; van Zwetselaar, M. ; Lukjancenko, Oksana ; Alifrangis, M. ; Lund, Ole ; Mmbaga, B. T. ; Kibiki, G. ; Aarestrup, Frank Møller
in journal: Tropical Medicine & International Health (ISSN: 1360-2276), vol: 22, issue: S1, pages: 359-359, 2017
Presented at:
10th European Congress on Tropical Medicine and International Health, 2017, Antwerp

Type: Conference abstract in journal (Peer reviewed)

Status: Published     |    Year: 2017