Kai Blin

Kai Blin

Researcher

DTU BIOSUSTAIN
Novo Nordisk Foundation Center for Biosustainability

Technical University of Denmark

Kemitorvet

Building 220, room 326F

2800 Kgs. Lyngby

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2018
 

CRISPR-Cas9 Toolkit for Actinomycete Genome Editing

Tong, Yaojun ; Robertsen, Helene Lunde ; Blin, Kai ; Weber, Tilmann ; Lee, Sang Yup
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 163-184, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_11

2017
  PDF

The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters

Blin, Kai ; Medema, Marnix H. ; Kottmann, Renzo ; Lee, Sang Yup ; Weber, Tilmann
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkw960), vol: 45, issue: D1, pages: D555-D559, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkw960

  PDF

Designing sgRNAs with CRISPy web

Blin, Kai ; Lee, Sang Yup ; Weber, Tilmann
in journal: Lab Times (ISSN: 1864-2381), issue: 1, pages: 53, 2017

Type: Journal article

Status: Published     |    Year: 2017

  PDF

plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters

Kautsar, Satria A. ; Suarez Duran, Hernando G. ; Blin, Kai ; Osbourn, Anne ; Medema, Marnix H.
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkx305), vol: 45, issue: W1, pages: W55-W63, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkx305

  PDF

The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery

Alanjary, Mohammad ; Kronmiller, Brent ; Adamek, Martina ; Blin, Kai ; Weber, Tilmann ; Huson, Daniel ; Philmus, Benjamin ; Ziemert, Nadine
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkx360), vol: 45, pages: W42-W48, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkx360

  PDF

antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification

Blin, Kai ; Wolf, Thomas ; Chevrette, Marc G. ; Lu, Xiaowen ; Schwalen, Christopher J. ; Kautsar, Satria A. ; Suarez Duran, Hernando G. ; de Los Santos, Emmanuel L. C. ; Kim, Hyun Uk ; Nave, Mariana ; Dickschat, Jeroen S. ; Mitchell, Douglas A. ; Shelest, Ekaterina ; Breitling, Rainer ; Takano, Eriko ; Lee, Sang Yup ; Weber, Tilmann ; Medema, Marnix H.
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkx319), vol: 45, pages: W36-W41, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkx319

  PDF

Dissemination of antibiotic resistance genes from antibiotic producers to pathogens

Jiang, Xinglin ; Ellabaan, Mostafa M Hashim ; Charusanti, Pep ; Munck, Christian ; Blin, Kai ; Tong, Yaojun ; Weber, Tilmann ; Sommer, Morten Otto Alexander ; Lee, Sang Yup
in journal: Nature Communications (ISSN: 2041-1723) (DOI: http://dx.doi.org/10.1038/ncomms15784), vol: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/ncomms15784

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Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters

Blin, Kai ; Kim, Hyun Uk ; Medema, Marnix H. ; Weber, Tilmann
in journal: Briefings in Bioinformatics (ISSN: 1467-5463) (DOI: http://dx.doi.org/10.1093/bib/bbx146), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/bib/bbx146

 

Recent development of computational resources for new antibiotics discovery

Kim, Hyun Uk ; Blin, Kai ; Lee, Sang Yup ; Weber, Tilmann
in journal: Current Opinion in Microbiology (ISSN: 1369-5274) (DOI: http://dx.doi.org/10.1016/j.mib.2017.10.027), vol: 39, pages: 113-120, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.mib.2017.10.027

2016
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CRISPy-web

Blin, Kai ; Pedersen, Lasse Ebdrup ; Weber, Tilmann ; Lee, Sang Yup
in journal: Synthetic and Systems Biotechnology (ISSN: 2405-805x) (DOI: http://dx.doi.org/10.1016/j.synbio.2016.01.003), vol: 1, issue: 2, pages: 118-121, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1016/j.synbio.2016.01.003