Kai Blin

Kai Blin

Researcher

DTU BIOSUSTAIN
Novo Nordisk Foundation Center for Biosustainability

Technical University of Denmark

Kemitorvet

Building 220, room 326F

2800 Kgs. Lyngby

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2018
 

CRISPR-Cas9 Toolkit for Actinomycete Genome Editing

Tong, Yaojun ; Robertsen, Helene Lunde ; Blin, Kai ; Weber, Tilmann ; Lee, Sang Yup
part of: Synthetic Metabolic Pathways (ISBN: 978-1-4939-7294-4), pages: 163-184, 2018,

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7295-1_11

  PDF

Patscanui: an intuitive web interface for searching patterns in DNA and protein data

Blin, Kai ; Wohlleben, Wolfgang ; Weber, Tilmann
in: Nucleic Acids Research (ISSN: 0305-1048), vol: 46, issue: W1, pages: W205-W208, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1093/nar/gky321

 

Bioconda: sustainable and comprehensive software distribution for the life sciences

Grüning , Björn ; Dale, Ryan ; Sjödin, Andreas ; Chapman, Brad A. ; Rowe, Jillian ; Tomkins-Tinch, Christopher H. ; Valieris, Renan ; Köster, Johannes ; Blin, Kai ; Haudgaard, Mathias ; Kratz, Arne ; Junge, Alexander ; Knudsen, Michael
in: Nature Methods (ISSN: 1548-7091), vol: 15, pages: 475-476, 2018

Type: Comment/debate (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1038/s41592-018-0046-7

2017
  PDF

The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters

Blin, Kai ; Medema, Marnix H. ; Kottmann, Renzo ; Lee, Sang Yup ; Weber, Tilmann
in: Nucleic Acids Research (ISSN: 0305-1048), vol: 45, issue: D1, pages: D555-D559, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkw960

  PDF

Designing sgRNAs with CRISPy web

Blin, Kai ; Lee, Sang Yup ; Weber, Tilmann
in: Lab Times (ISSN: 1864-2381), issue: 1, pages: 53, 2017

Type: Journal article

Status: Published     |    Year: 2017

  PDF

plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters

Kautsar, Satria A. ; Suarez Duran, Hernando G. ; Blin, Kai ; Osbourn, Anne ; Medema, Marnix H.
in: Nucleic Acids Research (ISSN: 0305-1048), vol: 45, issue: W1, pages: W55-W63, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkx305

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The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery

Alanjary, Mohammad ; Kronmiller, Brent ; Adamek, Martina ; Blin, Kai ; Weber, Tilmann ; Huson, Daniel ; Philmus, Benjamin ; Ziemert, Nadine
in: Nucleic Acids Research (ISSN: 0305-1048), vol: 45, pages: W42-W48, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkx360

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antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification

Blin, Kai ; Wolf, Thomas ; Chevrette, Marc G. ; Lu, Xiaowen ; Schwalen, Christopher J. ; Kautsar, Satria A. ; Suarez Duran, Hernando G. ; de Los Santos, Emmanuel L. C. ; Kim, Hyun Uk ; Nave, Mariana ; Dickschat, Jeroen S. ; Mitchell, Douglas A. ; Shelest, Ekaterina ; Breitling, Rainer ; Takano, Eriko ; Lee, Sang Yup ; Weber, Tilmann ; Medema, Marnix H.
in: Nucleic Acids Research (ISSN: 0305-1048), vol: 45, pages: W36-W41, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkx319

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Dissemination of antibiotic resistance genes from antibiotic producers to pathogens

Jiang, Xinglin ; Ellabaan, Mostafa M Hashim ; Charusanti, Pep ; Munck, Christian ; Blin, Kai ; Tong, Yaojun ; Weber, Tilmann ; Sommer, Morten Otto Alexander ; Lee, Sang Yup
in: Nature Communications (ISSN: 2041-1723), vol: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/ncomms15784

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Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters

Blin, Kai ; Kim, Hyun Uk ; Medema, Marnix H. ; Weber, Tilmann
in: Briefings in Bioinformatics (ISSN: 1467-5463), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/bib/bbx146