Paolo Marcatili

Paolo Marcatili

Associate Professor

DTU BIOINFORMATICS
Department of Bio and Health Informatics

Immunoinformatics and Machine Learning
DTU Bioinformatics Employees

Technical University of Denmark

Kemitorvet

Building 208, room 012

2800 Kgs. Lyngby

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Fax +45 45 93 15 85
E-mail pamar@bioinformatics.dtu.dk
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2017
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ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping

Hansen, Christian Skjødt ; Østerbye, Thomas ; Marcatili, Paolo ; Lund, Ole ; Buus, Søren ; Nielsen, Morten
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0168453), vol: 12, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0168453

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Positive diversifying selection is a pervasive adaptive force throughout the Drosophila radiation

Cicconardi, Francesco ; Marcatili, Paolo ; Arthofer, Wolfgang ; Schlick-Steiner, Birgit C ; Steiner, Florian M
in journal: Molecular Phylogenetics and Evolution (ISSN: 1055-7903) (DOI: http://dx.doi.org/10.1016/j.ympev.2017.04.023), vol: 112, pages: 230-243, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.ympev.2017.04.023

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BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

Jespersen, Martin Closter ; Peters, Bjoern ; Nielsen, Morten ; Marcatili, Paolo
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkx346), vol: 45, issue: W1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkx346

 

3D protein-structure-oriented discovery of clinical relation across chronic lymphocytic leukemia patients

Mochament, Konstantinos ; Agathangelidis, Andreas ; Polychronidou, Eleftheria ; Palaskas, Christos ; Kalamaras, Elias ; Moschonas, Panagiotis ; Stamatopoulos, Kostas ; Chailyan, Anna ; Overby, Nanna ; Marcatili, Paolo ; Hadzidimitriou, Anastasia ; Tzovaras, Dimitrios
in journal: Lecture Notes in Computer Science (ISSN: 0302-9743) (DOI: http://dx.doi.org/10.1007/978-3-319-56154-7_14), vol: 10209, pages: 139-150, 2017
Presented at:
5th International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2017, Granada, Spain, April 26–28, 2017, 2017, Granada

Type: Conference article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/978-3-319-56154-7_14

 

NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data

Jurtz, Vanessa Isabell ; Paul, Sinu ; Andreatta, Massimo ; Marcatili, Paolo ; Peters, Bjoern ; Nielsen, Morten
in journal: Journal of Immunology (ISSN: 0022-1767) (DOI: http://dx.doi.org/10.4049/jimmunol.1700893), vol: 199, issue: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.4049/jimmunol.1700893

2016
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Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity

Asti, Lorenzo ; Uguzzoni, Guido ; Marcatili, Paolo ; Pagnani, Andrea
in journal: P L o S Computational Biology (Online) (ISSN: 1553-7358) (DOI: http://dx.doi.org/10.1371/journal.pcbi.1004870), vol: 12, issue: 4, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1371/journal.pcbi.1004870

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A novel approach to probe host-pathogen interactions of bovine digital dermatitis, a model of a complex polymicrobial infection

Marcatili, Paolo ; Weiss Nielsen , Martin ; Sicheritz-Pontén, Thomas ; Jensen, Tim Kåre ; Schafer-Nielsen, Claus ; Boye, Mette ; Nielsen, Morten ; Schou, Kirstine Klitgaard
in journal: BMC Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/s12864-016-3341-7), vol: 17, issue: 1, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1186/s12864-016-3341-7

 

Automated Clustering Analysis of Immunoglobulin Sequences in Chronic Lymphocytic Leukemia Based on 3D Structural Descriptors

Marcatili, Paolo ; Mochament, Konstantinos ; Agathangelidis, Andreas ; Moschonas, Panagiotis ; Sutton, Lesley-Ann ; Yan, Xiao-Jie ; Bikos, Vasilis ; Vardi, Anna ; Chailyan, Anna ; Stavroyianni, Niki ; Jensen, Kamilla Kjærgaard ; Anagnostopoulos, Achilles ; Chiorazzi, Nicholas ; Belessi, Chrysoula ; Rosenquist, Richard ; Ghia, Paolo ; Stamatopoulos, Kostas ; Hadzidimitriou, Anastasia ; Tzovaras, Dimitrios
in journal: Blood (ISSN: 0006-4971), vol: 128, issue: 22, pages: 4365, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016

 

Identification of common bacterial antigenic markers from bovine digital dermatitis lesions using meta-transcriptomics in combination with high-density peptide-microarrays

Weiss Nielsen , Martin ; Marcatili, Paolo ; Sicheritz-Pontén, Thomas ; Jensen, Tim Kåre ; Schafer-Nielsen, Claus ; Boye, M. ; Nielsen, M. ; Schou, Kirstine Klitgaard
Presented at:
2nd International Symposium Alternatives to Antibiotics , 2016, Paris

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    Year: 2016

2015
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Tabhu: tools for antibody humanization.

Olimpieri, Pier Paolo ; Marcatili, Paolo ; Tramontano, Anna
in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/btu667), vol: 31, issue: 3, pages: 434-435, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.1093/bioinformatics/btu667