Paolo Marcatili

Paolo Marcatili

Associate Professor

DTU BIOINFORMATICS
Department of Bio and Health Informatics

Immunoinformatics and Machine Learning
DTU Bioinformatics Employees

Technical University of Denmark

Kemitorvet

Building 208, room 012

2800 Kgs. Lyngby

Ph.
Fax +45 45 93 15 85
E-mail pamar@bioinformatics.dtu.dk
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2018
 

Identification of the cognate peptide-MHC target of T cell receptors using molecular modeling and force field scoring

Lanzarotti, Esteban ; Marcatili, Paolo ; Nielsen, Morten
in: Molecular Immunology (ISSN: 0161-5890), vol: 94, pages: 91-97, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1016/j.molimm.2017.12.019

 

Improved methods for predicting peptide binding affinity to MHC class II molecules

Jensen, Kamilla Kjærgaard ; Andreatta, Massimo ; Marcatili, Paolo ; Buus, Søren ; Greenbaum, Jason A ; Yan, Zhen ; Sette, Alessandro ; Peters, Bjoern ; Nielsen, Morten
in: Immunology (ISSN: 0019-2805), vol: 154, issue: 3, pages: 394-406, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.1111/imm.12889

  PDF

Human MHC-II with Shared Epitope Motifs Are Optimal Epstein-Barr Virus Glycoprotein 42 Ligands—Relation to Rheumatoid Arthritis

Trier, Nicole ; Gonzalez-Izarzugaza, Jose Maria ; Chailyan, Anna ; Marcatili, Paolo ; Houen, Gunnar
in: International Journal of Molecular Sciences (Online) (ISSN: 1661-6596), vol: 19, issue: 1, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: http://dx.doi.org/10.3390/ijms19010317

2017
  PDF

ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping

Hansen, Christian Skjødt ; Østerbye, Thomas ; Marcatili, Paolo ; Lund, Ole ; Buus, Søren ; Nielsen, Morten
in: P L o S One (ISSN: 1932-6203), vol: 12, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0168453

  PDF

Positive diversifying selection is a pervasive adaptive force throughout the Drosophila radiation

Cicconardi, Francesco ; Marcatili, Paolo ; Arthofer, Wolfgang ; Schlick-Steiner, Birgit C ; Steiner, Florian M
in: Molecular Phylogenetics and Evolution (ISSN: 1055-7903), vol: 112, pages: 230-243, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.ympev.2017.04.023

  PDF

BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

Jespersen, Martin Closter ; Peters, Bjoern ; Nielsen, Morten ; Marcatili, Paolo
in: Nucleic Acids Research (ISSN: 0305-1048), vol: 45, issue: W1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkx346

 

3D protein-structure-oriented discovery of clinical relation across chronic lymphocytic leukemia patients

Mochament, Konstantinos ; Agathangelidis, Andreas ; Polychronidou, Eleftheria ; Palaskas, Christos ; Kalamaras, Elias ; Moschonas, Panagiotis ; Stamatopoulos, Kostas ; Chailyan, Anna ; Overby, Nanna ; Marcatili, Paolo ; Hadzidimitriou, Anastasia ; Tzovaras, Dimitrios
in: Lecture Notes in Computer Science (ISSN: 0302-9743), vol: 10209, pages: 139-150, 2017
Presented at:
5th International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2017, Granada, Spain, April 26–28, 2017, 2017, Granada

Type: Conference article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/978-3-319-56154-7_14

 

NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data

Jurtz, Vanessa Isabell ; Paul, Sinu ; Andreatta, Massimo ; Marcatili, Paolo ; Peters, Bjoern ; Nielsen, Morten
in: Journal of Immunology (ISSN: 0022-1767), vol: 199, issue: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.4049/jimmunol.1700893

  PDF

PROVIDE a project aiming at protein valorization through informatics, hydrolysis, and separation

Hansen, Egon Bech ; Jacobsen, Charlotte ; Lund, Ole ; Marcatili, Paolo ; García Moreno, Pedro Jesús
part of: Book of Abstracts Sustain 2017, 2017, Technical University of Denmark (DTU), Kgs. Lyngby, Denmark
Presented at:
Sustain 2017, 2017, Kgs. Lyngby

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    Year: 2017

2016
  PDF

Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity

Asti, Lorenzo ; Uguzzoni, Guido ; Marcatili, Paolo ; Pagnani, Andrea
in: P L o S Computational Biology (Online) (ISSN: 1553-7358), vol: 12, issue: 4, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1371/journal.pcbi.1004870