Jose Maria Gonzalez-Izarzugaza

Jose Maria Gonzalez-Izarzugaza

Associate Professor

DTU BIOINFORMATICS
Department of Bio and Health Informatics

Integrative Systems Biology
DTU Bioinformatics Employees

Technical University of Denmark

Kemitorvet

Building 208, room 017

2800 Kgs. Lyngby

Home page

Request a vCard via e-mail.

Publications
Projects
Activities
Courses
CV
DTU news
Loading

Publications rss feed

2018
 

Accurate genotyping across variant classes and lengths using variant graphs

Sibbesen, Jonas Andreas ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Dam-Als, Thomas ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben ; Friborg, Rune M. ; Halager, Anders Egerup ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick ; Ali , Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in: Nature Genetics, 2011

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41588-018-0145-5

 

A generic Deep Convolutional Neural Network framework for prediction of Receptor-ligand Interactions. NetPhosPan; Application to Kinase Phosphorylation prediction.

Fenoy, Emilio ; Gonzalez-Izarzugaza, Jose Maria ; Jurtz, Vanessa ; Brunak, Søren ; Nielsen, Morten
in: Bioinformatics (Online), 2011

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: https://doi.org/10.1093/bioinformatics/bty715

  PDF

Analysis of a gene panel for targeted sequencing of colorectal cancer samples

Jensen, Klaus Højgaard ; Izarzugaza, Jose M.G ; Sierakowska Juncker, Agnieszka ; Borup Hansen, Rasmus ; Frøstrup Hansen, Torben ; Timshel, Pascal ; Blondal, Thorarinn ; Jensen, Thomas Skøt ; Rygaard-Hjalsted, Eske ; Mouritzen, Peter ; Thorsen, Michael ; Wernersson, Rasmus ; Nielsen, Henrik Bjørn ; Jakobsen, Anders ; Brunak, Søren ; Brandt Sørensen, Flemming
in: OncoTarget, vol: 9, issue: 10, pages: 9043-9060, 2011

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.18632/oncotarget.24138

  PDF

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

Matey-Hernandez, María Luisa ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Andreas Sibbesen, Jonas ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; Beusekom, Johan v. ; Espeseth, Thomas ; Flindt, Esben N. ; Friborg, Rune M. ; Halager, Anders Egerup ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Ali , Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide ; Izarzugaza, Jose M. G.
in: B M C Bioinformatics, vol: 19, 2011

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1186/s12859-018-2239-6

  PDF

Human MHC-II with Shared Epitope Motifs Are Optimal Epstein-Barr Virus Glycoprotein 42 Ligands—Relation to Rheumatoid Arthritis

Trier, Nicole ; Gonzalez-Izarzugaza, Jose Maria ; Chailyan, Anna ; Marcatili, Paolo ; Houen, Gunnar
in: International Journal of Molecular Sciences (Online), vol: 19, issue: 1, 2011

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.3390/ijms19010317

 

Retinoic Acid Signaling in Thymic Epithelial Cells Regulates Thymopoiesis

Wendland, Kerstin ; Niss, Kristoffer ; Kotarsky, Knut ; Wu, Nikita Y. H. ; White, Andrea J ; Jendholm, Johan ; Rivollier, Aymeric ; Izarzugaza, Jose M G ; Brunak, Søren ; Holländer, Georg A ; Anderson, Graham ; Sitnik, Katarzyna M. ; Agace, William Winston
in: Journal of Immunology, vol: 200, issue: 11, 2011

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.4049/jimmunol.1800418

2017
  PDF

Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

Gonzalez-Izarzugaza, Jose Maria ; Skov, Laurits ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Andreas Sibbesen, Jonas ; Liu, Siyang ; Villesen, Palle ; Belling, Kirstine González-Izarzugaza ; Theil Have, Christian ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben ; Friborg, Rune M. ; Halager, Anders E. ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Qaswar Ali Shah, Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in: P L o S Genetics, vol: 13, issue: 8, 2011

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1371/journal.pgen.1006834

  PDF

Assembly and analysis of 100 full MHC haplotypes from the Danish population

Jensen, Jacob M. ; Villesen, Palle ; Friborg, Rune M. ; Mailund, Thomas ; Besenbacher, Søren ; Schierup, Mikkel H. ; Gonzalez-Izarzugaza, Jose Maria
in: Genome Research, 2011

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2017     |    DOI: https://doi.org/10.1101/gr.218891.116

  PDF

Cutavirus in Cutaneous Malignant Melanoma

Mollerup, Sarah ; Fridholm, Helena ; Vinner, Lasse ; Kjartansdóttir, Kristín Rós ; Friis-Nielsen, Jens ; Asplund, Maria ; Herrera, Jose Romero ; Steiniche, Torben ; Mourier, Tobias ; Brunak, Søren ; Willerslev, Eske ; Gonzalez-Izarzugaza, Jose Maria ; Hansen, Anders Johannes ; Nielsen, Lars Peter
in: Emerging Infectious Diseases , vol: 23, issue: 2, pages: 363-365, 2011

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.3201/eid2302.161564

  PDF

Deep feature learning for virus detection using a Convolutional Neural Network

Calvo, Diego ; de la Torre, Isabel ; Franco, Manuel Angel ; Brunak, Søren ; Gonzalez-Izarzugaza, Jose Maria
part of: Book of Abstracts, Sustain 2017, 2017, Technical University of Denmark (DTU)
Presented at:
Sustain 2017

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    Year: 2017