Nikolaus Sonnenschein

Nikolaus Sonnenschein

Senior Researcher

DTU BIOSUSTAIN
Novo Nordisk Foundation Center for Biosustainability

Technical University of Denmark

Kemitorvet

Building 220, room 225F

2800 Kgs. Lyngby

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2018
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Cameo: A Python Library for Computer Aided Metabolic Engineering and Optimization of Cell Factories

Cardoso, Joao ; Jensen, Kristian ; Lieven, Christian ; Hansen, Anne Sofie Lærke ; Kutuzova, Svetlana ; Beber, Moritz Emanuel ; Özdemir, Emre ; Herrgard, Markus ; Redestig, Nils Henning ; Sonnenschein, Nikolaus
in journal: A C S Synthetic Biology (ISSN: 2161-5063) (DOI: http://dx.doi.org/10.1021/acssynbio.7b00423), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1021/acssynbio.7b00423

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MARSI: metabolite analogues for rational strain improvement

Cardoso, Joao ; Zeidan, Ahmad A ; Jensen, Kristian ; Sonnenschein, Nikolaus ; Neves, Ana Rute ; Herrgård, Markus J
in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/bty108), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1093/bioinformatics/bty108

2017
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Systems biology solutions for biochemical production challenges

Hansen, Anne Sofie Lærke ; Lennen, Rebecca ; Sonnenschein, Nikolaus ; Herrgard, Markus
in journal: Current Opinion in Biotechnology (ISSN: 0958-1669) (DOI: http://dx.doi.org/10.1016/j.copbio.2016.11.018), vol: 45, pages: 85-91, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.copbio.2016.11.018

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DD-DeCaF: Data-Driven Design of Cell Factories and Communities

Beber, Moritz Emanuel ; Dannaher, Danny ; Fodor, Matyas ; Kutuzova, Svetlana ; Redestig, Nils Henning ; Sonnenschein, Nikolaus ; Herrgard, Markus
part of: Book of Abstracts, Sustain 2017, 2017, Technical University of Denmark (DTU),
Presented at:
Sustain 2017, 2017, Kgs. Lyngby

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    Year: 2017

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Memote - The genome-scale metabolic model test suite

Lieven, Christian ; Beber, Moritz Emanuel ; Sonnenschein, Nikolaus
part of: Book of Abstracts, Sustain 2017, 2017, Technical University of Denmark (DTU),
Presented at:
Sustain 2017, 2017, Kgs. Lyngby

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    Year: 2017

2016
 

Genome-Scale Models

Bergdahl, Basti ; Sonnenschein, Nikolaus ; Machado, Daniel ; Herrgard, Markus ; Förster, Jochen
part of: Fundamental Bioengineering (ISBN: 9783527336746), pages: 143-182, 2015, Wiley-VCH, Weinheim, Germany

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1002/9783527697441.ch06

 

Engineering an NADPH/NADPRedox Biosensor in Yeast

Zhang, Jie ; Sonnenschein, Nikolaus ; Pihl, Thomas Peter Boye ; Pedersen, Kasper Rud ; Jensen, Michael Krogh ; Keasling, Jay
in journal: A C S Synthetic Biology (ISSN: 2161-5063) (DOI: http://dx.doi.org/10.1021/acssynbio.6b00135), vol: 5, issue: 12, pages: 1546–1556, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.1021/acssynbio.6b00135

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Optlang: An algebraic modeling language for mathematical optimization

Jensen, Kristian ; Cardoso, Joao ; Sonnenschein, Nikolaus
in journal: The Journal of Open Source Software (DOI: http://dx.doi.org/10.21105/joss.00139), 2016

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: http://dx.doi.org/10.21105/joss.00139

2015
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Analysis of genetic variation and potential applications in genome-scale metabolic modeling

Cardoso, Joao ; Andersen, Mikael Rørdam ; Herrgard, Markus ; Sonnenschein, Nikolaus
in journal: Frontiers in Bioengineering and Biotechnology (DOI: http://dx.doi.org/10.3389/fbioe.2015.00013), vol: 3, issue: 13, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: http://dx.doi.org/10.3389/fbioe.2015.00013