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DTU Bioinformatik
Jon Ison

Jon Ison

Seniorforsker

Institut for Bio- og Sundhedsinformatik

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 013

2800 Kgs. Lyngby

Tlf.
Fax 45 93 15 85
E-mail jison@bioinformatics.dtu.dk
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Publikationer
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2017
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ReGaTE: Registration of Galaxy Tools in Elixir

Doppelt-Azeroual, Olivia ; Mareuil, Fabien ; Deveaud, Eric ; Kalas, Matús ; Soranzo, Nicola ; van den Beek, Marius ; Gruening, Bjoern ; Ison, Jon ; Ménager, Hervé
in: GigaScience (ISSN: 2047-217X), vol: 6, issue: 6, pages: 1-4, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1093/gigascience/gix022

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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

McMurry, Julie A ; Juty, Nick ; Blomberg, Niklas ; Burdett, Tony ; Conlin, Tom ; Conte, Nathalie ; Courtot, Mélanie ; Deck, John ; Dumontier, Michel ; Fellows, Donal K ; Gonzalez-Beltran, Alejandra ; Gormanns, Philipp ; Grethe, Jeffrey ; Hastings, Janna ; Hériché, Jean-Karim ; Hermjakob, Henning ; Ison, Jon ; Jimenez, Rafael C. ; Jupp, Simon ; Kunze, John ; Laibe, Camille ; Le Novère, Nicolas ; Malone, James ; Martin, Maria Jesus ; McEntyre, Johanna R. ; Morris, Chris ; Muilu, Juha ; Müller, Wolfgang ; Rocca-Serra, Philippe ; Sansone, Susanna-Assunta ; Sariyar, Murat ; Snoep, Jacky L. ; Soiland-Reyes, Stian ; Stanford, Natalie J. ; Swainston, Neil ; Washington, Nicole ; Williams, Alan R. ; Wimalaratne, Sarala M. ; Winfree, Lilly M. ; Wolstencroft, Katherine ; Goble, Carole ; Mungall, Christopher J ; Haendel, Melissa A ; Parkinson, Helen
in: P L o S Biology (ISSN: 1544-9173), vol: 15, issue: 6, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pbio.2001414

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Four simple recommendations to encourage best practices in research software

Jiménez, Rafael C. ; Kuzak, Mateusz ; Alhamdoosh, Monther ; Barker, Michelle ; Batut, Bérénice ; Borg, Mikael ; Capella-Gutierrez, Salvador ; Chue Hong, Neil ; Cook, Martin ; Corpas, Manuel ; Flannery, Madison ; Garcia, Leyla ; Gelpi, Josep Ll ; Gladman, Simon ; Goble, Carole ; González Ferreiro, Montserrat ; Gonzalez-Beltran, Alejandra ; Griffin, Philippa C. ; Grüning , Björn ; Hagberg, Jonas ; Holub, Petr ; Hooft, Rob ; Ison, Jon ; Katz, Daniel S. ; Leskošek, Brane ; López Gómez, Federico ; Oliveira, Luis J. ; Mellor, David ; Mosbergen, Rowland ; Mulder, Nicola ; Perez-Riverol, Yasset ; Pergl, Robert ; Pichler, Horst ; Pope, Bernard ; Sanz, Ferran ; Schneider, Maria V. ; Stodden, Victoria ; Suchecki, Radosław ; Svobodová Vařeková, Radka ; Talvik, Harry Anton ; Todorov, Ilian ; Treloar, Andrew ; Tyagi, Sonika ; van Gompel, Maarten ; Vaughan, Daniel ; Via, Allegra ; Wang, Xiaochuan ; Watson-Haigh, Nathan S. ; Crouch, Steve
in: F1000Research (ISSN: 2046-1402), vol: 6, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.12688/f1000research.11407.1

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Using bio.tools to generate and annotate workbench tool descriptions

Hillion, Kenzo-Hugo ; Kuzmin, Ivan ; Khodak, Anton ; Rasche, Eric ; Crusoe, Michael ; Peterson, Hedi ; Ison, Jon ; Ménager, Hervé
in: F1000Research (ISSN: 2046-1402), vol: 6, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.12688/f1000research.12974.1

2016
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Using registries to integrate bioinformatics tools and services into workbench environments

Ménager, Hervé ; Kalaš, Matúš ; Rapacki, Kristoffer ; Ison, Jon
in: International Journal on Software Tools for Technology Transfer (ISSN: 1433-2779), vol: 18, issue: 6, pages: 581-586, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1007/s10009-015-0392-z

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Tools and data services registry

Ison, Jon ; Rapacki, Kristoffer ; Ménager, Hervé ; Kalaš, Matúš ; Rydza, Emil Karol ; Chmura, Piotr Jaroslaw ; Anthon, Christian ; Beard, Niall ; Berka, Karel ; Bolser, Dan ; Booth, Tim ; Bretaudeau, Anthony ; Brezovsky, Jan ; Casadio, Rita ; Cesareni, Gianni ; Coppens, Frederik ; Cornell, Michael ; Cuccuru, Gianmauro ; Davidsen, Kristian ; Vedova, Gianluca Della ; Dogan, Tunca ; Doppelt-Azeroual, Olivia ; Emery, Laura ; Gasteiger, Elisabeth ; Gatter, Thomas ; Goldberg, Tatyana ; Grosjean, Marie ; Grüning, Björn ; Helmer-Citterich, Manuela ; Ienasescu, Hans ; Ioannidis, Vassilios ; Jespersen, Martin Closter ; Jimenez, Rafael ; Juty, Nick ; Juvan, Peter ; Koch, Maximilian ; Laibe, Camille ; Li, Jing-Woei ; Licata, Luana ; Mareuil, Fabien ; Mičetić, Ivan ; Friborg, Rune Møllegaard ; Moretti, Sebastien ; Morris, Chris ; Möller, Steffen ; Nenadic, Aleksandra ; Peterson, Hedi ; Profiti, Giuseppe ; Rice, Peter ; Romano, Paolo ; Roncaglia, Paola ; Saidi, Rabie ; Schafferhans, Andrea ; Schwämmle, Veit ; Smith, Callum ; Sperotto, Maria Maddalena ; Stockinger, Heinz ; Vařeková, Radka Svobodová ; Tosatto, Silvio C. E. ; de la Torre, Victor ; Uva, Paolo ; Via, Allegra ; Yachdav, Guy ; Zambelli, Federico ; Vriend, Gert ; Rost, Burkhard ; Parkinson, Helen ; Løngreen, Peter ; Brunak, Søren
in: Nucleic Acids Research (ISSN: 0305-1048), vol: 44, issue: D1, pages: D38-D47, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1093/nar/gkv1116