Thomas Nordahl Petersen

Thomas Nordahl Petersen

Lektor

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Metagenomics
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 021

2800 Kgs. Lyngby

Tlf.
Tlf.
Fax 45 93 15 85
E-mail tnp@bioinformatics.dtu.dk
ORCID 0000-0002-2484-5716
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Publikationer
Projekter
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2017
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MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Petersen, Thomas Nordahl ; Lukjancenko, Oksana ; Thomsen, Martin Christen Frølund ; Sperotto, Maria Maddalena ; Lund, Ole ; Aarestrup, Frank Møller ; Sicheritz-Pontén, Thomas
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0176469), vol: 12, issue: 5, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0176469

 

The CGE Tool Box

Larsen, Mette Voldby ; Joensen, Katrine Grimstrup ; Zankari, Ea ; Ahrenfeldt, Johanne ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Roer, Louise ; Leekitcharoenphon, Pimlapas ; Saputra, Dhany ; Cosentino, S. ; Thomsen, Martin Christen Frølund ; Bellod Cisneros, Jose Luis ; Jurtz, Vanessa Isabell ; Rasmussen, Simon ; Petersen, Thomas Nordahl ; Hasman, Henrik ; Sicheritz-Pontén, Thomas ; Aarestrup, Frank Møller ; Lund, Ole
part of: Applied Genomics of Foodborne Pathogens, pages: 65-90, 2017, Springer, Switzerland

Type: Book chapter (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1007/978-3-319-43751-4_5

 

Protein features as determinants of wild-type glycoside hydrolase thermostability

Geertz-Hansen, Henrik Marcus ; Kiemer, Lars ; Nielsen, Morten ; Stanchev, Kiril ; Blom, Nikolaj ; Brunak, Søren ; Petersen, Thomas Nordahl
in journal: Proteins (ISSN: 0887-3585) (DOI: http://dx.doi.org/10.1002/prot.25357), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2017     |    DOI: http://dx.doi.org/10.1002/prot.25357

2015
2014
 

Compass: A hybrid method for clinical and biobank data mining

Krysiak-Baltyn, Konrad ; Petersen, Thomas Nordahl ; Audouze, Karine Marie Laure ; Jørgensen, Niels ; Ängquist, L. ; Brunak, Søren
in journal: Journal of Biomedical Informatics (ISSN: 1532-0464) (DOI: http://dx.doi.org/10.1016/j.jbi.2013.10.007), vol: 47, pages: 160-170, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: http://dx.doi.org/10.1016/j.jbi.2013.10.007

 

Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds

Geertz-Hansen, Henrik Marcus ; Sorgenfrei Blom, Nikolaj ; Feist, Adam ; Brunak, Søren ; Petersen, Thomas Nordahl
in journal: Proteins (ISSN: 0887-3585) (DOI: http://dx.doi.org/10.1002/prot.24536), vol: 82, issue: 9, pages: 1819-1828, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: http://dx.doi.org/10.1002/prot.24536

2013
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Prediction of Disease Causing Non-Synonymous SNPs by the Artificial Neural Network Predictor NetDiseaseSNP.

Johansen, Morten Bo ; Gonzalez-Izarzugaza, Jose Maria ; Brunak, Søren ; Petersen, Thomas Nordahl ; Gupta, Ramneek
in journal: PloS one. (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0068370), vol: 8, issue: 7, 2013

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2013     |    DOI: http://dx.doi.org/10.1371/journal.pone.0068370

2011
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Prediction of protein structural features by use of artificial neural networks

Petersen, Bent ; Lundegaard, Claus (Supervisor) ; Petersen, Thomas Nordahl (Supervisor)
Technical University of Denmark (DTU), pages: 122

Type: Ph.D. thesis

Status: Published     |    År: 2011

 

SignalP 4.0: discriminating signal peptides from transmembrane regions

Petersen, Thomas Nordahl ; Brunak, Søren ; von Heijne, Gunnar ; Nielsen, Henrik
in journal: Nature Methods (ISSN: 1548-7091) (DOI: http://dx.doi.org/10.1038/nmeth.1701), vol: 8, issue: 10, pages: 785-786, 2011

Type: Letter (Peer reviewed)

Status: Published     |    År: 2011     |    DOI: http://dx.doi.org/10.1038/nmeth.1701