Henrik Nielsen

Henrik Nielsen

Lektor

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Disease Intelligence and Molecular Evolution
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 005

2800 Kgs. Lyngby

Hjemmeside

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Publikationer
Projekter
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2017
 

Predicting Secretory Proteins with SignalP

Nielsen, Henrik
in journal: Methods in Molecular Biology (ISSN: 1064-3745) (DOI: http://dx.doi.org/10.1007/978-1-4939-7015-5_6), vol: 1611, pages: 59-73, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7015-5_6

 

Protein Sorting Prediction

Nielsen, Henrik
part of: Bacterial Protein Secretion Systems: Methods and Protocols, pages: 23-57, 2017, Springer,

Type: Book chapter

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1007/978-1-4939-7033-9_2

 

An introduction to Deep learning on biological sequence data - Examples and solutions

Jurtz, Vanessa Isabell ; Johansen, Alexander Rosenberg ; Nielsen, Morten ; Almagro Armenteros, Jose Juan ; Nielsen, Henrik ; Kaae Sønderby, Casper ; Winther, Ole ; Kaae Sønderby, Søren
in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/btx531), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2017     |    DOI: http://dx.doi.org/10.1093/bioinformatics/btx531

 

DeepLoc: prediction of protein subcellular localization using deep learning

Almagro Armenteros, Jose Juan ; Sønderby, Casper Kaae ; Sønderby, Søren Kaae ; Nielsen, Henrik ; Winther, Ole
in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/btx431), vol: 33, issue: 21, pages: 3387-3395, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1093/bioinformatics/btx431

2016
 

Predicting Subcellular Localization of Proteins by Bioinformatic Algorithms

Nielsen, Henrik
part of: Protein Export in Gram-positive Bacteria, 2016, Springer,

Type: Book chapter (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1007/82_2015_5006

2015
  PDF

Convolutional LSTM Networks for Subcellular Localization of Proteins

Nielsen, Henrik ; Sønderby, Søren Kaae ; Sønderby, Casper Kaae ; Winther, Ole
Presented at:
First Annual Danish Bioinformatics Conference, 2015, Odense

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2015

  PDF

Protein raftophilicity. How bioinformatics can help membranologists

Nielsen, Henrik ; Sperotto, Maria Maddalena
Presented at:
First Annual Danish Bioinformatics Conference, 2015, Odense

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2015

  PDF

Convolutional LSTM Networks for Subcellular Localization of Proteins

Sønderby, Søren Kaae ; Sønderby, Casper Kaae ; Nielsen, Henrik ; Winther, Ole
part of: Algorithms for Computational Biology (ISBN: 978-3-319-21232-6), pages: 68-80, 2015, Springer,
Presented at:
2nd International Conference on Algorithms for Computational Biology, 2015, Mexico City

Type: Article in proceedings (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: http://dx.doi.org/10.1007/978-3-319-21233-3_6

2014
  PDF

LocTree3 prediction of localization

Goldberg, T. ; Hecht, M. ; Hamp, T. ; Karl, T. ; Yachdav, G. ; Ahmed, Nadeed ; Altermann, U. ; Angerer, P. ; Ansorge, S. ; Balasz, K. ; Bernhofer, M. ; Betz, A. ; Cizmadija, L. ; Do, K. T. ; Gerke, J. ; Greil, R. ; Joerdens, V. ; Hastreiter, M. ; Hembach, K. ; Herzog, M. ; Kalemanov, M. ; Kluge, M. ; Meier, A. ; Nasir, H. ; Neumaier, U. ; Prade, V. ; Reeb, J. ; Sorokoumov, A. ; Troshani, I. ; Vorberg, S. ; Waldraff, S. ; Zierer, J. ; Nielsen, Henrik ; Rost, B.
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gku396), vol: 42, issue: W1, pages: W350-W355, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: http://dx.doi.org/10.1093/nar/gku396

2011
 

SignalP 4.0: discriminating signal peptides from transmembrane regions

Petersen, Thomas Nordahl ; Brunak, Søren ; von Heijne, Gunnar ; Nielsen, Henrik
in journal: Nature Methods (ISSN: 1548-7091) (DOI: http://dx.doi.org/10.1038/nmeth.1701), vol: 8, issue: 10, pages: 785-786, 2011

Type: Letter (Peer reviewed)

Status: Published     |    År: 2011     |    DOI: http://dx.doi.org/10.1038/nmeth.1701