Thomas Sicheritz-Pontén

Thomas Sicheritz-Pontén

Professor

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Metagenomics
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 021

2800 Kgs. Lyngby

Hjemmeside

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Publikationer
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Publikationer rss feed

2017
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Genome Sequence of Talaromyces atroroseus, Which Produces Red Colorants for the Food Industry

Thrane, Ulf ; Rasmussen, Kasper Bøwig ; Petersen, Bent ; Rasmussen, Simon ; Sicheritz-Pontén, Thomas ; Mortensen, Uffe Hasbro
in journal: Genome Announcements (ISSN: 2169-8287) (DOI: http://dx.doi.org/10.1128/genomeA.01736-16), vol: 5, issue: 9, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1128/genomeA.01736-16

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Complete mitochondrial genome of the Oriental Hornet, Vespa orientalis F. (Hymenoptera: Vespidae)

Haddad, Nizar Jamal ; Al-Nakeeb, Kosai Ali Ahmed ; Petersen, Bent ; Dalén, Love ; Sorgenfrei Blom, Nikolaj ; Sicheritz-Pontén, Thomas
in journal: Mitochondrial DNA Part B (ISSN: 2380-2359) (DOI: http://dx.doi.org/10.1080/23802359.2017.1292480), vol: 2, issue: 1, pages: 139-140, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1080/23802359.2017.1292480

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Microbial Biogeography of the Arctic Cryosphere

Hauptmann, Aviaja Zenia Edna Lyberth ; Sicheritz-Pontén, Thomas (Supervisor)
Technical University of Denmark (DTU), pages: 124

Type: Ph.D. thesis

Status: Published     |    År: 2017

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MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Petersen, Thomas Nordahl ; Lukjancenko, Oksana ; Thomsen, Martin Christen Frølund ; Sperotto, Maria Maddalena ; Lund, Ole ; Aarestrup, Frank Møller ; Sicheritz-Pontén, Thomas
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0176469), vol: 12, issue: 5, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0176469

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Discovery and description of complete ammonium oxidizers in groundwater-fed rapid sand filters

Palomo, Alejandro ; Smets, Barth F. (Main supervisor) ; Sicheritz-Pontén, Thomas (Main supervisor) ; Rasmussen, Simon (Supervisor) ; Bælum, Jacob (Supervisor)
Department of Environmental Engineering, Technical University of Denmark (DTU), pages: 61

Type: Ph.D. thesis

Status: Published     |    År: 2017

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The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics

Gopalakrishnan, Shyam ; Samaniego Castruita, Jose Alfredo ; Sinding, Mikkel Holger Strander ; Kuderna, Lukas F. K. ; Räikkönen, Jannikke ; Petersen, Bent ; Sicheritz-Pontén, Thomas ; Larson, Greger ; Orlando, Ludovic Antoine Alexandre ; Marques-Bonet, Tomas ; Hansen, Anders Johannes ; Dalén, Love ; Gilbert, M. Thomas P.
in journal: B M C Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/s12864-017-3883-3), vol: 18, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1186/s12864-017-3883-3

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Comparative performance of the BGISEQ-500 versus Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

Mak, Sarah Siu Tze Mak ; Gopalakrishnan, Shyam Sunder ; Carøe, Christian ; Geng, Chunyu ; Liu, Shanlin ; Sinding, Mikkel Holger Strander ; Kuderna, Lukas F.K. ; Zhang, Wenwei ; Fu, Shujin ; Garrett Vieira, Filipe Jorge ; Germonpré, Mietje ; Bocherens, Hervé ; Fedorov, Sergey ; Petersen, Bent ; Sicheritz-Pontén, Thomas ; Marques-Bonet, Tomas ; Zhang, Guojie ; Jiang, Hui ; Gilbert, M. Thomas P.
in journal: GigaScience (ISSN: 2047-217X) (DOI: http://dx.doi.org/10.1093/gigascience/gix049), vol: 6, issue: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1093/gigascience/gix049

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Contamination of the Arctic reflected in microbial metagenomes from the Greenland ice sheet

Hauptmann, Aviaja Zenia Edna Lyberth ; Sicheritz-Pontén, Thomas ; Cameron, Karen A. ; Bælum, Jacob ; Plichta, Damian Rafal ; Dalgaard, Marlene Danner ; Stibal, Marek
in journal: Environmental Research Letters (ISSN: 1748-9326) (DOI: http://dx.doi.org/10.1088/1748-9326/aa7445), vol: 12, issue: 7, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1088/1748-9326/aa7445

 

The CGE Tool Box

Larsen, Mette Voldby ; Joensen, Katrine Grimstrup ; Zankari, Ea ; Ahrenfeldt, Johanne ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Roer, Louise ; Leekitcharoenphon, Pimlapas ; Saputra, Dhany ; Cosentino, S. ; Thomsen, Martin Christen Frølund ; Bellod Cisneros, Jose Luis ; Jurtz, Vanessa Isabell ; Rasmussen, Simon ; Petersen, Thomas Nordahl ; Hasman, Henrik ; Sicheritz-Pontén, Thomas ; Aarestrup, Frank Møller ; Lund, Ole
part of: Applied Genomics of Foodborne Pathogens, pages: 65-90, 2017, Springer, Switzerland

Type: Book chapter (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1007/978-3-319-43751-4_5

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Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Sibbesen, Jonas Andreas ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine González-Izarzugaza ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben N. ; Friborg, Rune M. ; Halager, Anders E. ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngreen, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Syed, Ali ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Börglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in journal: Nature (ISSN: 0028-0836) (DOI: http://dx.doi.org/10.1038/nature23264), vol: 548, pages: 87-91, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1038/nature23264