Thomas Sicheritz-Pontén

Thomas Sicheritz-Pontén

Professor

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 021

2800 Kgs. Lyngby

Hjemmeside

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Publikationer
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2018
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Single-tube library preparation for degraded DNA

Carøe, Christian ; Gopalakrishnan, Shyam ; Vinner, Lasse ; Mak, Sarah S. T. ; Sinding, Mikkel-Holger S. ; Samaniego, Jose A. ; Wales, Nathan ; Sicheritz-Pontén, Thomas ; Gilbert, M. Thomas P.
in: Methods in Ecology and Evolution (ISSN: 2041-210X), vol: 9, issue: 2, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: http://dx.doi.org/10.1111/2041-210X.12871

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Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira

Palomo, Alejandro ; Pedersen, Anders Gorm ; Fowler, Jane ; Dechesne, Arnaud ; Sicheritz-Pontén, Thomas ; Smets, Barth F.
in: I S M E Journal (ISSN: 1751-7362), vol: 12, issue: 7, pages: 1779-1793, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: http://dx.doi.org/10.1038/s41396-018-0083-3

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Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

Zepeda Mendoza, M. Lisandra ; Xiong, Zijun ; Escalera-Zamudio, Marina ; Runge, Anne Kathrine ; Thézé, Julien ; Streicker, Daniel ; Frank, Hannah K. ; Loza-Rubio, Elizabeth ; Liu, Shengmao ; Ryder, Oliver A. ; Samaniego Castruita, Jose Alfredo ; Katzourakis, Aris ; Pacheco, George ; Taboada, Blanca ; Löber, Ulrike ; Pybus, Oliver G. ; Li, Yang ; Rojas-Anaya, Edith ; Bohmann, Kristine ; Carmona Baez, Aldo ; Arias, Carlos F. ; Liu, Shiping ; Greenwood, Alex D. ; Bertelsen, Mads F. ; White, Nicole E. ; Bunce, Michael ; Zhang, Guojie ; Sicheritz-Pontén, Thomas ; Gilbert, M. P.Thomas
in: Nature Ecology & Evolution (ISSN: 2397-334X), vol: 2, pages: 659-668, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: http://dx.doi.org/10.1038/s41559-018-0476-8

 

Accurate genotyping across variant classes and lengths using variant graphs

Sibbesen, Jonas Andreas ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine González-Izarzugaza ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Dam-Als, Thomas ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben ; Friborg, Rune M. ; Halager, Anders Egerup ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick ; Qaswar Ali Shah, Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in: Nature Genetics (ISSN: 1061-4036), 2018

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: http://dx.doi.org/10.1038/s41588-018-0145-5

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Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

Matey-Hernandez, María Luisa ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Andreas Sibbesen, Jonas ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine González-Izarzugaza ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; Beusekom, Johan v. ; Espeseth, Thomas ; Flindt, Esben N. ; Friborg, Rune M. ; Halager, Anders Egerup ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Qaswar Ali Shah, Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in: B M C Bioinformatics (ISSN: 1471-2105), vol: 19, 2018

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: http://dx.doi.org/10.1186/s12859-018-2239-6

2017
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Genome Sequence of Talaromyces atroroseus, Which Produces Red Colorants for the Food Industry

Thrane, Ulf ; Rasmussen, Kasper Bøwig ; Petersen, Bent ; Rasmussen, Simon ; Sicheritz-Pontén, Thomas ; Mortensen, Uffe Hasbro
in: Genome Announcements (ISSN: 2169-8287), vol: 5, issue: 9, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1128/genomeA.01736-16

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Complete mitochondrial genome of the Oriental Hornet, Vespa orientalis F. (Hymenoptera: Vespidae)

Haddad, Nizar Jamal ; Al-Nakeeb, Kosai Ali Ahmed ; Petersen, Bent ; Dalén, Love ; Sorgenfrei Blom, Nikolaj ; Sicheritz-Pontén, Thomas
in: Mitochondrial DNA Part B (ISSN: 2380-2359), vol: 2, issue: 1, pages: 139-140, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1080/23802359.2017.1292480

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Microbial Biogeography of the Arctic Cryosphere

Hauptmann, Aviaja Zenia Edna Lyberth ; Sicheritz-Pontén, Thomas (Supervisor)
Technical University of Denmark (DTU), pages: 124

Type: Ph.D. thesis

Status: Published     |    År: 2017

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Discovery and description of complete ammonium oxidizers in groundwater-fed rapid sand filters

Palomo, Alejandro ; Smets, Barth F. (Main supervisor) ; Sicheritz-Pontén, Thomas (Main supervisor) ; Rasmussen, Simon (Supervisor) ; Bælum, Jacob (Supervisor)
Department of Environmental Engineering, Technical University of Denmark (DTU), pages: 61

Type: Ph.D. thesis

Status: Published     |    År: 2017