Thomas Sicheritz-Pontén

Thomas Sicheritz-Pontén

Professor

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Metagenomics
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 021

2800 Kgs. Lyngby

Tlf.
Tlf.
Fax 45 93 15 85
E-mail thomas@cbs.dtu.dk
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Publikationer
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Publikationer rss feed

2017
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Genome Sequence of Talaromyces atroroseus, Which Produces Red Colorants for the Food Industry

Thrane, Ulf ; Rasmussen, Kasper Bøwig ; Petersen, Bent ; Rasmussen, Simon ; Sicheritz-Pontén, Thomas ; Mortensen, Uffe Hasbro
in journal: Genome Announcements (ISSN: 2169-8287) (DOI: http://dx.doi.org/10.1128/genomeA.01736-16), vol: 5, issue: 9, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1128/genomeA.01736-16

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Complete mitochondrial genome of the Oriental Hornet, Vespa orientalis F. (Hymenoptera: Vespidae)

Haddad, Nizar Jamal ; Al-Nakeeb, Kosai Ali Ahmed ; Petersen, Bent ; Dalén, Love ; Sorgenfrei Blom, Nikolaj ; Sicheritz-Pontén, Thomas
in journal: Mitochondrial DNA Part B (ISSN: 2380-2359) (DOI: http://dx.doi.org/10.1080/23802359.2017.1292480), vol: 2, issue: 1, pages: 139-140, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1080/23802359.2017.1292480

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Microbial Biogeography of the Arctic Cryosphere

Hauptmann, Aviaja Zenia Edna Lyberth ; Sicheritz-Pontén, Thomas (Supervisor)
Technical University of Denmark, pages: 124

Type: Ph.D. thesis

Status: Published     |    År: 2017

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MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Petersen, Thomas Nordahl ; Lukjancenko, Oksana ; Thomsen, Martin Christen Frølund ; Sperotto, Maria Maddalena ; Lund, Ole ; Aarestrup, Frank Møller ; Sicheritz-Pontén, Thomas
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0176469), vol: 12, issue: 5, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0176469

2016
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Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers

Friis-Nielsen, Jens ; Kjartansdóttir, Kristín Rós ; Mollerup, Sarah ; Asplund, Maria ; Mourier, Tobias ; Holm Jensen, Randi ; Arn Hansen, Thomas ; Rey-Iglesia, Alba ; Vinner, Lasse ; Fridholm, Helena ; Nielsen, Lars Peter ; Willerslev, Eske ; Sicheritz-Pontén, Thomas ; Lund, Ole ; Hansen, Anders Johannes ; Gonzalez-Izarzugaza, Jose Maria ; Brunak, Søren
in journal: Viruses (ISSN: 1999-4915) (DOI: http://dx.doi.org/10.3390/v8020053), vol: 8, issue: 53, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.3390/v8020053

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Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis

Walter, Stephanie ; Ali, Sajid ; Kemen, Eric ; Nazari, Kumarse ; Bahri, Bochra A. ; Enjalbert, Jérôme ; Hansen, Jens G. ; Brown, James K.M. ; Sicheritz-Pontén, Thomas ; Jones, Jonathan ; de Vallavieille-Pope, Claude ; Hovmøller, Mogens S. ; Justesen, Annemarie Fejer
in journal: Ecology and Evolution (ISSN: 2045-7758) (DOI: http://dx.doi.org/10.1002/ece3.2069), vol: 6, issue: 9, pages: 2790-2804, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1002/ece3.2069

 

Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp

Palomo, Alejandro ; Fowler, Jane ; Gülay, Arda ; Rasmussen, Simon ; Sicheritz-Pontén, Thomas ; Smets, Barth F.
in journal: The I S M E Journal (ISSN: 1751-7362) (DOI: http://dx.doi.org/10.1038/ismej.2016.63), vol: 10, pages: 2569–2581, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1038/ismej.2016.63

 

Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut

Roager, Henrik Munch ; Hansen, Lea Benedicte Skov ; Bahl, Martin Iain ; Frandsen, Henrik Lauritz ; Carvalho, Vera ; Gøbel, Rikke J ; Dalgaard, Marlene Danner ; Plichta, Damian Rafal ; Sparholt, Morten H ; Vestergaard, Henrik ; Hansen, Torben ; Sicheritz-Pontén, Thomas ; Nielsen, Henrik Bjørn ; Pedersen, Oluf ; Lauritzen, Lotte ; Kristensen, Mette ; Gupta, Ramneek ; Licht, Tine Rask
in journal: Nature Microbiology (ISSN: 2058-5276) (DOI: http://dx.doi.org/10.1038/nmicrobiol.2016.93), vol: 1, issue: 9, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1038/nmicrobiol.2016.93

 

Transcriptional interactions suggest niche segregation among microorganisms in the human gut

Plichta, Damian Rafal ; Juncker, Agnieszka ; dos Santos, Marcelo Bertalan Quintanilha ; Rettedal, Elizabeth ; Gautier, Laurent ; Varela, Encarna ; Manichanh, Chaysavanh ; Fouqueray, Charlène ; Levenez, Florence ; Nielsen, Trine ; Doré, Joël ; Machado, Ana Manuel ; de Evgrafov, Mari Cristina Rodriguez ; Hansen, Torben ; Jørgensen, Torben ; Bork, Peer ; Guarner, Francisco ; Pedersen, Oluf
in journal: Nature Microbiology (ISSN: 2058-5276) (DOI: http://dx.doi.org/10.1038/nmicrobiol.2016.152), vol: 1, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1038/nmicrobiol.2016.152

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Metagenomics and single-cell genomics reveal high abundance of comammox Nitrospira in a rapid gravity sand filter treating groundwater

Palomo, Alejandro ; Fowler, Jane ; Gülay, Arda ; Rasmussen, Simon ; Schramm, Andreas ; Sicheritz-Pontén, Thomas ; Smets, Barth F.
Presented at:
16th International Symposium on Microbial Ecology (ISME16), 2016, Montreal

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2016