Ramneek Gupta

Ramneek Gupta

Lektor

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Disease Intelligence and Molecular Evolution
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 021

2800 Kgs. Lyngby

Tlf.
Tlf.
Fax 45 93 15 85
E-mail rg@bioinformatics.dtu.dk
Hjemmeside

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Publikationer
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2017
 

Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses

Shukla, Neha ; Yadav, Rachita ; Kaur, Pritam ; Rasmussen, Simon ; Goel, Shailendra ; Agarwal, Manu ; Jagannath, Arun ; Gupta, Ramneek ; Kumar, Amar
in journal: Molecular Plant Pathology (ISSN: 1464-6722) (DOI: http://dx.doi.org/10.1111/mpp.12547), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2017     |    DOI: http://dx.doi.org/10.1111/mpp.12547

 

Obesity is associated with depot-specific alterations in adipocyte DNA methylation and gene expression

Sonne, Si Brask ; Yadav, Rachita ; Yin, Guangliang ; Dalgaard, Marlene Danner ; Myrmel, Lene Secher ; Gupta, Ramneek ; Wang, Jun ; Madsen, Lise ; Kajimura, Shingo ; Kristiansen, Karsten
in journal: Adipocyte (Philadelphia) (ISSN: 2162-3945) (DOI: http://dx.doi.org/10.1080/21623945.2017.1320002), vol: 6, issue: 2, pages: 124-133, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1080/21623945.2017.1320002

 

Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor

Wang, Zhaoming ; McGlynn, Katherine A. ; Rajpert-De Meyts, Ewa ; Bishop, D. Timothy ; Chung, Charles C. ; Dalgaard, Marlene Danner ; Greene, Mark H. ; Gupta, Ramneek ; Grotmol, Tom ; Haugen, Trine B. ; Karlsson, Robert ; Litchfield, Kevin ; Mitra, Nandita ; Nielsen, Kasper ; Pyle, Louise C. ; Schwartz, Stephen M. ; Thorsson, Vésteinn ; Vardhanabhuti, Saran ; Wiklund, Fredrik ; Turnbull, Clare ; Chanock, Stephen J. ; Kanetsky, Peter A. ; Nathanson, Katherine L.
in journal: Nature Genetics (ISSN: 1061-4036) (DOI: http://dx.doi.org/10.1038/ng.3879), vol: 49, issue: 7, pages: 1141-1147, 2017

Type: Letter (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1038/ng.3879

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Cerebellar mutism syndrome in children with brain tumours of the posterior fossa

Wibroe, Morten ; Cappelen, Johan ; Castor, Charlotte ; Clausen, Niels ; Grillner, Pernilla ; Gudrunardottir, Thora ; Gupta, Ramneek ; Gustavsson, Bengt ; Heyman, Mats ; Holm, Stefan ; Karppinen, Atte ; Klausen, Camilla ; Lonnqvist, Tuula ; Mathiasen, Rene ; Nilsson, Pelle ; Nysom, Karsten ; Persson-Waller, Karin ; Rask, Olof ; Schmiegelow, Kjeld ; Sehested, Astrid ; Thomassen, Harald ; Tonning-Olsson, Ingrid ; Zetterqvist, Barbara ; Juhler, Marianne
in journal: B M C Cancer (ISSN: 1471-2407) (DOI: http://dx.doi.org/10.1186/s12885-017-3416-0), vol: 17, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1186/s12885-017-3416-0

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Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Sibbesen, Jonas Andreas ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine González-Izarzugaza ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben N. ; Friborg, Rune M. ; Halager, Anders E. ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngreen, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Syed, Ali ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Börglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in journal: Nature (ISSN: 0028-0836) (DOI: http://dx.doi.org/10.1038/nature23264), vol: 548, pages: 87-91, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1038/nature23264

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Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

Gonzalez-Izarzugaza, Jose Maria ; Skov, Laurits ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Andreas Sibbesen, Jonas ; Liu, Siyang ; Villesen, Palle ; Belling, Kirstine González-Izarzugaza ; Theil Have, Christian ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben ; Friborg, Rune M. ; Halager, Anders E. ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Qaswar Ali Shah, Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in journal: P L o S Genetics (ISSN: 1553-7390) (DOI: http://dx.doi.org/10.1371/journal.pgen.1006834), vol: 13, issue: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pgen.1006834

 

Metabolite ratios as potential biomarkers for type 2 diabetes: a DIRECT study

Molnos, Sophie ; Wahl, Simone ; Haid, Mark ; Eekhoff, E. Marelise W. ; Pool, René ; Floegel, Anna ; Deelen, Joris ; Much, Daniela ; Prehn, Cornelia ; Breier, Michaela ; Draisma, Harmen H. ; van Leeuwen, Nienke ; Simonis-Bik, Annemarie M.C. ; Jonsson, Anna Elisabet ; Willemsen, Gonneke ; Bernigau, Wolfgang ; Wang-Sattler, Rui ; Suhre, Karsten ; Peters, Annette ; Thorand, Barbara ; Herder, Christian ; Rathmann, Wolfgang ; Roden, Michael ; Gieger, Christian ; Kramer, Mark H.H. ; van Heemst, Diana ; Pedersen, Helle Krogh ; Gudmundsdottir, Valborg ; Schulze, Matthias B. ; Pischon, Tobias ; de Geus, Eco J.C. ; Boeing, Heiner ; Boomsma, Dorret I. ; Ziegler, Anette G. ; Slagboom, P. Eline ; Hummel, Sandra ; Beekman, Marian ; Grallert, Harald ; Brunak, Søren ; McCarthy, Mark I. ; Gupta, Ramneek ; Pearson, Ewan R. ; Adamski, Jerzy ; 'T Hart, Leen M.
in journal: Diabetologia (ISSN: 0012-186X) (DOI: http://dx.doi.org/10.1007/s00125-017-4436-7), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2017     |    DOI: http://dx.doi.org/10.1007/s00125-017-4436-7

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Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial

Roager, Henrik Munch ; Vogt, Josef Korbinian ; Kristensen, Mette ; Hansen, Lea Benedicte Skov ; Ibrügger, Sabine ; Mærkedahl, Rasmus B ; Bahl, Martin Iain ; Lind, Mads Vendelbo ; Nielsen, Rikke Linnemann ; Frøkiær, Hanne ; Gøbel, Rikke Juul ; Landberg, Rikard ; Ross, Alastair B ; Pedersen, Susanne Brix ; Holck, Jesper ; Meyer, Anne S. ; Sparholt, Morten H ; Christensen, Anders F ; Carvalho, Vera ; Holst, Jens Juul ; Rumessen, Jüri Johannes ; Linneberg, Allan ; Sicheritz-Pontén, Thomas ; Dalgaard, Marlene Danner ; Blennow, Andreas ; Frandsen, Henrik Lauritz ; Villas-Bôas, Silas Granato ; Kristiansen, Karsten ; Vestergaard, Henrik ; Hansen, Torben ; Ekstrøm, Claus T ; Ritz, Christian ; Nielsen, Henrik Bjørn ; Pedersen, Oluf Borbye ; Gupta, Ramneek ; Lauritzen, Lotte ; Licht, Tine Rask
in journal: Gut (ISSN: 0017-5749) (DOI: http://dx.doi.org/10.1136/gutjnl-2017-314786), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2017     |    DOI: http://dx.doi.org/10.1136/gutjnl-2017-314786

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Clustering on baseline clinical variables identifies subgroups of type 2 diabetes patients with different rate of progression over 18 months: a DIRECT study

Brorsson, Caroline Anna ; Pedersen, Helle Krogh ; Gudmundsdottir, Valborg ; Mari, A. ; Kurbasic, A. ; Vinuela, A. ; Fernandez, J. ; Mahajan, A. ; Gupta, Ramneek ; Dermitzakis, E. ; MacCarthy, M. ; Franks, P. ; Pearson, E. ; Brunak, Søren
in journal: Diabetologia (ISSN: 0012-186X), vol: 60, issue: Suppl. 1, pages: S117, 2017
Presented at:
53rd EASD Annual Meeting of the European Association for the Study of Diabetes, 2017, Lisbon

Type: Conference abstract in journal (Peer reviewed)

Status: Published     |    År: 2017

2016
  PDF

Colonic transit time relates to bacterial metabolism and mucosal turnover in the human gut

Roager, Henrik Munch ; Hansen, Lea Benedicte Skov ; Bahl, Martin Iain ; Frandsen, Henrik Lauritz ; Carvalho, Vera ; Gøbel, Rikke J. ; Dalgaard, Marlene Danner ; Sparholt, Morten ; Vestergaard, Henrik ; Hansen, Torben ; Sicheritz-Ponten, Thomas ; Nielsen, Henrik Bjørn ; Pedersen, Oluf ; Lauritzen, Lotte ; Kristensen, Mette ; Gupta, Ramneek ; Licht, Tine Rask
Presented at:
10th Joint Symposium INRA-Rowett 2016: Gut Microbiology, 2016, Clermont-Ferrand

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2016