Martin Christen Frølund Thomsen

Martin Christen Frølund Thomsen

Ph.d.-studerende

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Genomic Epidemiology
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 003

2800 Kgs. Lyngby

Tlf.
Tlf.
Mobil
Fax 45 93 15 85
E-mail mcft@cbs.dtu.dk
ORCID 0000-0002-7666-4693
Hjemmeside

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Publikationer
Projekter
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2017
 

WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark

Roer, Louise ; Hansen, Frank ; Thomsen, Martin Christen Frølund ; Knudsen, Jenny Dahl ; Hansen, Dennis Schrøder ; Wang, Mikala ; Samulioniené, Jurgita ; Justesen, Ulrik Stenz ; Røder, Bent L ; Schumacher, Helga ; Østergaard, Claus ; Andersen, Leif Percival ; Dzajic, Esad ; Søndergaard, Turid Snekloth ; Stegger, Marc ; Hammerum, Anette Marie ; Hasman, Henrik
in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dkx092), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2017     |    DOI: http://dx.doi.org/10.1093/jac/dkx092

  PDF

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Petersen, Thomas Nordahl ; Lukjancenko, Oksana ; Thomsen, Martin Christen Frølund ; Sperotto, Maria Maddalena ; Lund, Ole ; Aarestrup, Frank Møller ; Sicheritz-Pontén, Thomas
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0176469), vol: 12, issue: 5, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0176469

2016
  PDF

A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance

Thomsen, Martin Christen Frølund ; Ahrenfeldt, Johanne ; Bellod Cisneros, Jose Luis ; Jurtz, Vanessa Isabell ; Larsen, Mette Voldby ; Hasman, Henrik ; Aarestrup, Frank Møller ; Lund, Ole
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0157718), vol: 11, issue: 6, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1371/journal.pone.0157718

2015
  PDF

Genomic Epidemiology

Lund, Ole ; Thomsen, Martin Christen Frølund ; Bellod Cisneros, Jose Luis ; Ahrenfeldt, Johanne ; Tetzschner, Anna Maria Malberg ; Leekitcharoenphon, Pimlapas ; Kaas, Rolf Sommer ; Lukjancenko, Oksana ; Aarestrup, Frank Møller
part of: Book of Abstracts. DTU's Sustain Conference 2015, 2015, Technical University of Denmark, Lyngby
Presented at:
DTU Sustain Conference 2015, 2015, Lyngby

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2015

2013
 

MHCcluster, a method for functional clustering of MHC molecules

Thomsen, Martin Christen Frølund ; Lundegaard, Claus ; Buus, Søren ; Lund, Ole ; Nielsen, Morten
in journal: Immunogenetics (ISSN: 0093-7711) (DOI: http://dx.doi.org/10.1007/s00251-013-0714-9), vol: 65, issue: 9, pages: 655-665, 2013

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2013     |    DOI: http://dx.doi.org/10.1007/s00251-013-0714-9

2012
  PDF

Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion

Thomsen, Martin Christen Frølund ; Nielsen, Morten
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gks469), vol: 40, issue: W1, pages: W281-W287, 2012

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2012     |    DOI: http://dx.doi.org/10.1093/nar/gks469

  PDF

snpTree - a web-server to identify and construct SNP trees from whole genome sequence data.

Leekitcharoenphon, Pimlapas ; Kaas, Rolf Sommer ; Thomsen, Martin Christen Frølund ; Rundsten, Carsten Friis ; Rasmussen, Simon ; Aarestrup, Frank Møller
in journal: B M C Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/1471-2164-13-S7-S6), vol: 13, issue: Suppl 7, pages: S6, 2012

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2012     |    DOI: http://dx.doi.org/10.1186/1471-2164-13-S7-S6