Martin Christen Frølund Thomsen

Martin Christen Frølund Thomsen

Postdoc

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Genomic Epidemiology
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 003

2800 Kgs. Lyngby

Hjemmeside

Få tilsendt vCard på e-mail.

Publikationer
Projekter
Loading

Publikationer rss feed

2017
 

WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark

Roer, Louise ; Hansen, Frank ; Thomsen, Martin Christen Frølund ; Knudsen, Jenny Dahl ; Hansen, Dennis Schrøder ; Wang, Mikala ; Samulioniené, Jurgita ; Justesen, Ulrik Stenz ; Røder, Bent L ; Schumacher, Helga ; Østergaard, Claus ; Andersen, Leif Percival ; Dzajic, Esad ; Søndergaard, Turid Snekloth ; Stegger, Marc ; Hammerum, Anette Marie ; Hasman, Henrik
in journal: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453) (DOI: http://dx.doi.org/10.1093/jac/dkx092), vol: 72, pages: 1922-1929, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1093/jac/dkx092

  PDF

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Petersen, Thomas Nordahl ; Lukjancenko, Oksana ; Thomsen, Martin Christen Frølund ; Sperotto, Maria Maddalena ; Lund, Ole ; Aarestrup, Frank Møller ; Sicheritz-Pontén, Thomas
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0176469), vol: 12, issue: 5, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0176469

 

Development of a web tool for Escherichia coli subtyping based on fimH alleles

Roer, Louise ; Tchesnokova, Veronika ; Allesøe, Rosa Lundbye ; Muradova, Mariya ; Chattopadhyay, Sujay ; Ahrenfeldt, Johanne ; Thomsen, Martin Christen Frølund ; Lund, Ole ; Hansen, Frank ; Hammerum, Anette Marie ; Sokurenko, Evgeni ; Hasman, Henrik
in journal: Journal of Clinical Microbiology (ISSN: 0095-1137) (DOI: http://dx.doi.org/10.1128/JCM.00737-17), vol: 55, issue: 8, pages: 2538-2543, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1128/JCM.00737-17

 

The CGE Tool Box

Larsen, Mette Voldby ; Joensen, Katrine Grimstrup ; Zankari, Ea ; Ahrenfeldt, Johanne ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Roer, Louise ; Leekitcharoenphon, Pimlapas ; Saputra, Dhany ; Cosentino, S. ; Thomsen, Martin Christen Frølund ; Bellod Cisneros, Jose Luis ; Jurtz, Vanessa Isabell ; Rasmussen, Simon ; Petersen, Thomas Nordahl ; Hasman, Henrik ; Sicheritz-Pontén, Thomas ; Aarestrup, Frank Møller ; Lund, Ole
part of: Applied Genomics of Foodborne Pathogens, pages: 65-90, 2017, Springer, Switzerland

Type: Book chapter (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1007/978-3-319-43751-4_5

  PDF

RUCS: Rapid identification of PCR primers for unique core sequences

Thomsen, Martin Christen Frølund ; Hasman, Henrik ; Westh, Henrik ; Kaya, Hülya ; Lund, Ole
in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/btx526), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2017     |    DOI: http://dx.doi.org/10.1093/bioinformatics/btx526

2016
  PDF

A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance

Thomsen, Martin Christen Frølund ; Ahrenfeldt, Johanne ; Bellod Cisneros, Jose Luis ; Jurtz, Vanessa Isabell ; Larsen, Mette Voldby ; Hasman, Henrik ; Aarestrup, Frank Møller ; Lund, Ole
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0157718), vol: 11, issue: 6, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1371/journal.pone.0157718

2015
  PDF

Genomic Epidemiology

Lund, Ole ; Thomsen, Martin Christen Frølund ; Bellod Cisneros, Jose Luis ; Ahrenfeldt, Johanne ; Tetzschner, Anna Maria Malberg ; Leekitcharoenphon, Pimlapas ; Kaas, Rolf Sommer ; Lukjancenko, Oksana ; Aarestrup, Frank Møller
part of: Book of Abstracts. DTU's Sustain Conference 2015, 2015, Technical University of Denmark (DTU), Lyngby
Presented at:
DTU Sustain Conference 2015, 2015, Lyngby

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2015

2013
 

MHCcluster, a method for functional clustering of MHC molecules

Thomsen, Martin Christen Frølund ; Lundegaard, Claus ; Buus, Søren ; Lund, Ole ; Nielsen, Morten
in journal: Immunogenetics (ISSN: 0093-7711) (DOI: http://dx.doi.org/10.1007/s00251-013-0714-9), vol: 65, issue: 9, pages: 655-665, 2013

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2013     |    DOI: http://dx.doi.org/10.1007/s00251-013-0714-9

2012
  PDF

Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion

Thomsen, Martin Christen Frølund ; Nielsen, Morten
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gks469), vol: 40, issue: W1, pages: W281-W287, 2012

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2012     |    DOI: http://dx.doi.org/10.1093/nar/gks469

  PDF

snpTree - a web-server to identify and construct SNP trees from whole genome sequence data.

Leekitcharoenphon, Pimlapas ; Kaas, Rolf Sommer ; Thomsen, Martin Christen Frølund ; Rundsten, Carsten Friis ; Rasmussen, Simon ; Aarestrup, Frank Møller
in journal: B M C Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/1471-2164-13-S7-S6), vol: 13, issue: Suppl 7, pages: S6, 2012

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2012     |    DOI: http://dx.doi.org/10.1186/1471-2164-13-S7-S6


Vis alle