Søren Brunak

Søren Brunak

Professor

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Integrative Systems Biology
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 006

2800 Kgs. Lyngby

Tlf.
Tlf.
Fax 45 93 15 85
E-mail brunak@cbs.dtu.dk
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Publikationer
Projekter
DTU nyheder
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2017
 

Combinatorial Drug Screening Identifies Ewing Sarcoma-specific Sensitivities

Radic-Sarikas, Branka ; Tsafou, Kalliopi P ; Emdal, Kristina B. ; Papamarkou, Theodore ; Huber, Kilian V. M. ; Mutz, Cornelia ; Toretsky, Jeffrey A ; Bennett, Keiryn L. ; Olsen, Jesper V. ; Brunak, Søren ; Kovar, Heinrich ; Superti-Furga, Giulio
in journal: Molecular Cancer Therapeutics (ISSN: 1535-7163) (DOI: http://dx.doi.org/10.1158/1535-7163.MCT-16-0235), vol: 16, issue: 1, pages: 88-101, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1158/1535-7163.MCT-16-0235

 

Early differences in islets from prediabetic NOD mice: combined microarray and proteomic analysis

Crèvecoeur, Inne ; Gudmundsdottir, Valborg ; Vig, Saurabh ; Marques Câmara Sodré, Fernanda ; D'Hertog, Wannes ; Fierro, Ana Carolina ; Van Lommel, Leentje ; Gysemans, Conny ; Marchal, Kathleen ; Waelkens, Etienne ; Schuit, Frans ; Brunak, Søren ; Overbergh, Lut ; Mathieu, Chantal
in journal: Diabetologia (ISSN: 0012-186X) (DOI: http://dx.doi.org/10.1007/s00125-016-4191-1), 2017

Type: Journal article (Peer reviewed)

Status: E-pub ahead of print     |    År: 2017     |    DOI: http://dx.doi.org/10.1007/s00125-016-4191-1

  PDF

Cutavirus in Cutaneous Malignant Melanoma

Mollerup, Sarah ; Fridholm, Helena ; Vinner, Lasse ; Kjartansdóttir, Kristín Rós ; Friis-Nielsen, Jens ; Asplund, Maria ; Herrera, Jose Romero ; Steiniche, Torben ; Mourier, Tobias ; Brunak, Søren ; Willerslev, Eske ; Gonzalez-Izarzugaza, Jose Maria ; Hansen, Anders Johannes ; Nielsen, Lars Peter
in journal: Emerging Infectious Diseases (ISSN: 1080-6040) (DOI: http://dx.doi.org/10.3201/eid2302.161564), vol: 23, issue: 2, pages: 363-365, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.3201/eid2302.161564

 

Nomenclature for alleles of the human carboxylesterase 1 gene

Rasmussen, Henrik B. ; Madsen, Majbritt B. ; Bjerre, Ditte ; Ferrero, Laura ; Linnet, Kristian ; Thomsen, Ragnar ; Jorgens, Gesche ; Dalhoff, Kim ; Stage, Claus ; Stefansson, Hreinn ; Hankemeier, Thomas ; Kaddurah-Daouk, Rima ; Brunak, Søren ; Taboureau, Olivier ; Nzabonimpa, Grace Shema ; Jeppesen, Pia ; Kaalund-Jørgensen, Kristine ; Kristensen, Karl Emil ; Pagsberg, Anne Katrine ; Plessen, Kerstin Jessica ; Hansen, Poul Erik ; Werge, Thomas ; Dyrborg, J. ; Lauritzen, Maj Britt ; Hughes, Tim
in journal: Pharmacogenetics and Genomics (ISSN: 1744-6872) (DOI: http://dx.doi.org/10.1097/FPC.0000000000000255), vol: 27, issue: 2, pages: 78-80, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1097/FPC.0000000000000255

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Chromosome-wise Protein Interaction Patterns and Their Impact on Functional Implications of Large-Scale Genomic Aberrations

Kirk, Isa Kristina ; Weinhold, Nils ; Belling, Kirstine González-Izarzugaza ; Skakkebæk, Niels Erik ; Jensen, Thomas Skøt ; Leffers, Henrik ; Juul, Anders ; Brunak, Søren
in journal: Cell Systems (ISSN: 2405-4712) (DOI: http://dx.doi.org/10.1016/j.cels.2017.01.001), vol: 4, issue: 3, pages: 357-364, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1016/j.cels.2017.01.001

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Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease

Folkersen, Lasse Westergaard ; Fauman, Eric ; Sabater-Lleal, Maria ; Strawbridge, Rona J. ; Frånberg, Mattias ; Sennblad, Bengt ; Baldassarre, Damiano ; Veglia, Fabrizio ; Humphries, Steve E ; Rauramaa, Rainer ; de Faire, Ulf ; Smit, Andries J ; Giral, Philippe ; Kurl, Sudhir ; Mannarino, Elmo ; Enroth, Stefan ; Johansson, Åsa ; Enroth, Sofia Bosdotter ; Gustafsson, Stefan ; Lind, Lars ; Lindgren, Cecilia M. ; Morris, Andrew P ; Giedraitis, Vilmantas ; Silveira, Angela ; Franco-Cereceda, Anders ; Tremoli, Elena ; Gyllensten, Ulf ; Ingelsson, Erik ; Brunak, Søren ; Eriksson, Per ; Ziemek, Daniel ; Hamsten, Anders ; Mälarstig, Anders
in journal: P L o S Genetics (ISSN: 1553-7390) (DOI: http://dx.doi.org/10.1371/journal.pgen.1006706), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pgen.1006706

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Pancreatic Islet Protein Complexes and Their Dysregulation in Type 2 Diabetes

Pedersen, Helle Krogh ; Gudmundsdottir, Valborg ; Brunak, Søren
in journal: Frontiers in Genetics (ISSN: 1664-8021) (DOI: http://dx.doi.org/10.3389/fgene.2017.00043), vol: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.3389/fgene.2017.00043

2016
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wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases

Vazquez, Miguel ; Pons, Tirso ; Brunak, Søren ; Valencia, Alfonso ; Gonzalez-Izarzugaza, Jose Maria
in journal: Human Mutation (ISSN: 1059-7794) (DOI: http://dx.doi.org/10.1002/humu.22914), vol: 37, issue: 1, pages: 36-42, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1002/humu.22914

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Tools and data services registry

Ison, Jon ; Rapacki, Kristoffer ; Ménager, Hervé ; Kalaš, Matúš ; Rydza, Emil Karol ; Chmura, Piotr Jaroslaw ; Anthon, Christian ; Beard, Niall ; Berka, Karel ; Bolser, Dan ; Booth, Tim ; Bretaudeau, Anthony ; Brezovsky, Jan ; Casadio, Rita ; Cesareni, Gianni ; Coppens, Frederik ; Cornell, Michael ; Cuccuru, Gianmauro ; Davidsen, Kristian ; Vedova, Gianluca Della ; Dogan, Tunca ; Doppelt-Azeroual, Olivia ; Emery, Laura ; Gasteiger, Elisabeth ; Gatter, Thomas ; Goldberg, Tatyana ; Grosjean, Marie ; Grüning, Björn ; Helmer-Citterich, Manuela ; Ienasescu, Hans ; Ioannidis, Vassilios ; Jespersen, Martin Closter ; Jimenez, Rafael ; Juty, Nick ; Juvan, Peter ; Koch, Maximilian ; Laibe, Camille ; Li, Jing-Woei ; Licata, Luana ; Mareuil, Fabien ; Mičetić, Ivan ; Friborg, Rune Møllegaard ; Moretti, Sebastien ; Morris, Chris ; Möller, Steffen ; Nenadic, Aleksandra ; Peterson, Hedi ; Profiti, Giuseppe ; Rice, Peter ; Romano, Paolo ; Roncaglia, Paola ; Saidi, Rabie ; Schafferhans, Andrea ; Schwämmle, Veit ; Smith, Callum ; Sperotto, Maria Maddalena ; Stockinger, Heinz ; Vařeková, Radka Svobodová ; Tosatto, Silvio C. E. ; de la Torre, Victor ; Uva, Paolo ; Via, Allegra ; Yachdav, Guy ; Zambelli, Federico ; Vriend, Gert ; Rost, Burkhard ; Parkinson, Helen ; Løngreen, Peter ; Brunak, Søren
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkv1116), vol: 44, issue: D1, pages: D38-D47, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1093/nar/gkv1116

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Propionibacterium acnes: disease-causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing

Mollerup, Sarah ; Friis-Nielsen, Jens ; Vinner, Lasse ; Richter, Stine Raith ; Fridholm, Helena ; Herrera, Jose Romero ; Lund, Ole ; Brunak, Søren ; Gonzalez-Izarzugaza, Jose Maria ; Mourier, Tobias ; Nielsen, Lars Peter ; Hansen, Anders Johannes
in journal: Journal of Clinical Microbiology (ISSN: 0095-1137) (DOI: http://dx.doi.org/10.1128/jcm.02723-15), vol: 54, issue: 4, pages: 980-987, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1128/jcm.02723-15