Anders Gorm Pedersen

Anders Gorm Pedersen

Professor

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Disease Intelligence and Molecular Evolution
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 017

2800 Kgs. Lyngby

Tlf.
Tlf.
Fax 45 93 15 85
E-mail gorm@cbs.dtu.dk
Hjemmeside

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Publikationer
Projekter
Kurser
DTU nyheder
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Publikationer rss feed

2016
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A fast and robust method for whole genome sequencing of the Aleutian Mink Disease Virus (AMDV) genome

Hagberg, Emma Elisabeth ; Krarup, Anders ; Fahnøe, Ulrik ; Larsen, Lars Erik ; Dam-Tuxen, Rebekka ; Pedersen, Anders Gorm
in journal: Journal of Virological Methods (ISSN: 0166-0934) (DOI: http://dx.doi.org/10.1016/j.jviromet.2016.03.010), vol: 234, pages: 43-51, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1016/j.jviromet.2016.03.010

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Using expected sequence features to improve basecalling accuracy of amplicon pyrosequencing data

Rask, Thomas Salhøj ; Petersen, Bent ; Chen, Donald S. ; Day, Karen P. ; Pedersen, Anders Gorm
in journal: B M C Bioinformatics (ISSN: 1471-2105) (DOI: http://dx.doi.org/10.1186/s12859-016-1032-7), vol: 17, issue: 1, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1186/s12859-016-1032-7

2015
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Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction

Fahnøe, Ulrik ; Pedersen, Anders Gorm ; Dräger, Carolin ; Orton, Richard J ; Blome, Sandra ; Höper, Dirk ; Beer, Martin ; Rasmussen, Thomas Bruun
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0140912), vol: 10, issue: 10, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: http://dx.doi.org/10.1371/journal.pone.0140912

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Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago

Rasmussen, Simon ; Allentoft, Morten Erik ; Nielsen, Kasper ; Orlando, Ludovic ; Sikora, Martin ; Sjögren, Karl-Göran ; Pedersen, Anders Gorm ; Schubert, Mikkel ; Van Dam, Alex ; Kapel, Christian Moliin Outzen ; Nielsen, Henrik Bjørn ; Brunak, Søren ; Avetisyan, Pavel ; Epimakhov, Andrey ; Khalyapin, Mikhail Viktorovich ; Gnuni, Artak ; Kriiska, Aivar ; Lasak, Irena ; Metspalu, Mait ; Moiseyev, Vyacheslav ; Gromov, Andrei ; Pokutta, Dalia ; Saag, Lehti ; Varul, Liivi ; Yepiskoposyan, Levon ; Sicheritz-Pontén, Thomas ; Foley, Robert A ; Lahr, Marta Mirazón ; Nielsen, Rasmus ; Kristiansen, Kristian ; Willerslev, Eske
in journal: Cell (ISSN: 0092-8674) (DOI: http://dx.doi.org/10.1016/j.cell.2015.10.009), vol: 163, issue: 3, pages: 571-582, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: http://dx.doi.org/10.1016/j.cell.2015.10.009

2014
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DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families

Sander, Adam F. ; Lavstsen, Thomas ; Rask, Thomas Salhøj ; Lisby, Michael ; Salanti, Ali ; Fordyce, Sarah L. ; Jespersen, Jakob S. ; Carter, Richard ; Deitsch, Kirk W. ; Theander, Thor G. ; Pedersen, Anders Gorm ; Arnot, David E.
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkt1174), vol: 42, issue: 4, pages: 2270-2281, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: http://dx.doi.org/10.1093/nar/gkt1174

 

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

Nielsen, Henrik Bjørn ; Almeida, Mathieu ; Juncker, Agnieszka ; Rasmussen, Simon ; Li, Junhua ; Sunagawa, Shinichi ; Plichta, Damian Rafal ; Gautier, Laurent ; Pedersen, Anders Gorm ; Emmanuelle, Le Chatelier ; Pelletier, Eric ; Bonde, Ida ; Nielsen, Trine ; Manichanh, Chaysavanh ; Arumugam, Manimozhiyan ; Batto, Jean-Michel ; dos Santos, Marcelo Bertalan Quintanilha ; Blom, Nikolaj ; Borruel, Natalia ; Burgdorf, Kristoffer S. ; Boumezbeur, Fouad ; Casellas, Francesc ; Doré, Joël ; Dworzynski, Piotr ; Guarner, Francisco ; Hansen, Torben ; Hildebrand, Falk ; Kaas, Rolf Sommer ; Kennedy, Sean ; Kristiansen, Karsten ; Kultima, Jens Roat ; Léonard, Pierre ; Levenez, Florence ; Lund, Ole ; Moumen, Bouziane ; Denis, Le Paslier ; Pons, Nicolas ; Pedersen, Oluf ; Prifti, Edi ; Qin, Junjie ; Raes, Jeroen ; Sørensen, Søren ; Tap, Julien ; Tims, Sebastian ; Ussery, David ; Yamada, Takuji ; Renault, Pierre ; Sicheritz-Pontén, Thomas ; Bork, Peer ; Wang, Jun ; Brunak, Søren ; Ehrlich, S. Dusko
in journal: Nature Biotechnology (ISSN: 1087-0156) (DOI: http://dx.doi.org/10.1038/nbt.2939), vol: 32, issue: 8, pages: 822-828, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: http://dx.doi.org/10.1038/nbt.2939

 

Rescue of the highly virulent classical swine fever virus strain “Koslov” from cloned cDNA and first insights into genome variations relevant for virulence

Fahnøe, Ulrik ; Pedersen, Anders Gorm ; Risager, Peter Christian ; Nielsen, Jens ; Belsham, Graham ; Höper, Dirk ; Beer, Martin ; Rasmussen, Thomas Bruun
in journal: Virology (ISSN: 0042-6822) (DOI: http://dx.doi.org/10.1016/j.virol.2014.08.021), vol: 468-470, pages: 379-387, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: http://dx.doi.org/10.1016/j.virol.2014.08.021

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Targeting the genetic complexity within adapting RNA virus populations

Fahnøe, Ulrik ; Pedersen, Anders Gorm (Supervisor) ; Rasmussen, Thomas Bruun (Main supervisor)
Technical University of Denmark, pages: 160

Type: Ph.D. thesis

Status: Published     |    År: 2014

2013
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Reconstructing the highly virulent Classical Swine Fever Virus strain Koslov

Fahnøe, Ulrik ; Pedersen, Anders Gorm ; Nielsen, Jens ; Höper, Dirk ; Beer, Martin ; Rasmussen, Thomas Bruun
Presented at:
SMBE 2013 – Annual Meeting of the Society for Molecular Biology and Evolution, 2013, Chicago, IL

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2013

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Comparison of two Next Generation sequencing platforms for full genome sequencing of Classical Swine Fever Virus

Fahnøe, Ulrik ; Pedersen, Anders Gorm ; Höper, Dirk ; Beer, Martin ; Rasmussen, Thomas Bruun
part of: ABSTRACTS, pages: 124, 2013,
Presented at:
7th Annual Meeting EPIZONE, 2013, Brussels

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2013