Hans Henrik Stærfeldt

Hans Henrik Stærfeldt

Videnskabelig programmør

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Genomic Epidemiology
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 014

2800 Kgs. Lyngby

Tlf.
Tlf.
Fax 45 93 15 85
E-mail hhs@cbs.dtu.dk
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Publikationer
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2017
 

A scored human protein-protein interaction network to catalyze genomic interpretation

Li, Taibo ; Wernersson, Rasmus ; Hansen, Rasmus B ; Horn, Heiko ; Mercer, Johnathan ; Slodkowicz, Grzegorz ; Workman, Christopher ; Rigina, Olga ; Rapacki, Kristoffer ; Stærfeldt, Hans Henrik ; Brunak, Søren ; Jensen, Thomas S. ; Lage, Kasper
in journal: Nature Methods (ISSN: 1548-7091) (DOI: http://dx.doi.org/10.1038/nmeth.4083), vol: 14, pages: 61–64, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1038/nmeth.4083

2010
  PDF

The Genome Atlas Resource

Azam Qureshi, Matloob ; Rotenberg, Eva ; Stærfeldt, Hans Henrik ; Hansson, Lena ; Ussery, David
part of: International Conference on Computational Systems-Biology and Bioinformatics, Proceedings, pages: 149-158, 2010, Springer,
Presented at:
International Conference on Computational Systems-Biology and Bioinformatics, 2010, Bangkok

Type: Article in proceedings (Peer reviewed)

Status: Published     |    År: 2010

 

Proteome analysis of pod and seed development in the model legume Lotus japonicus

Nautrup-Pedersen, G. ; Dam, S. ; Laursen, B. S. ; Siegumfeldt, A. L. ; Nielsen, Kasper ; Goffard, N. ; Stærfeldt, Hans Henrik ; Rundsten, Carsten Friis ; Sato, S. ; Tabata, S. ; Lorentzen, A. ; Roepstorff, P. ; Stougaard, J.
in journal: Journal of Proteome Research (ISSN: 1535-3893) (DOI: http://dx.doi.org/10.1021/pr100511u), vol: 9, issue: 11, 2010

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2010     |    DOI: http://dx.doi.org/10.1021/pr100511u

2009
 

The Proteome of Seed Development in the Model Legume Lotus japonicus

Dam, Svend ; Laursen, Brian S. ; Ornfelt, Jane H. ; Jochimsen, Bjarne ; Stærfeldt, Hans Henrik ; Rundsten, Carsten Friis ; Nielsen, Kasper ; Goffard, Nicolas ; Besenbacher, Søren ; Krusell, Lene ; Sato, Shusei ; Tabata, Satoshi ; Thogersen, Ida B. ; Enghild, Jan J. ; Stougaard, Jens
in journal: Plant Physiology (ISSN: 0032-0889) (DOI: http://dx.doi.org/10.1104/pp.108.133405), vol: 149, issue: 3, pages: 1325-1340, 2009

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2009     |    DOI: http://dx.doi.org/10.1104/pp.108.133405

  PDF

GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes

Hallin, Peter Fischer ; Stærfeldt, Hans Henrik ; Rotenberg, Eva ; Binnewies, Tim Terence ; Benham, CJ ; Ussery, David
in journal: Standards in Genomic Research (ISSN: 1944-3277) (DOI: http://dx.doi.org/10.4056/sigs.28177), vol: 1, issue: 2, pages: 204-215, 2009

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2009     |    DOI: http://dx.doi.org/10.4056/sigs.28177

2007
 

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

Gorodkin, Jan ; Cirera, Susanna ; Hedegaard, Jacob ; Gilchrist, Michael J. ; Panitz, Frank ; Jørgensen, Claus ; Scheibye-Knudsen, Karsten ; Arvin, Troels ; Lumholdt, Steen ; Sawera, Milena ; Green, Trine ; Nielsen, Bente J. ; Havgaard, Jacob H. ; Rosenkilde, Carina ; Wang, Jun ; Li, Heng ; Li, Ruiqiang ; Liu, Bin ; Hu, Songnian ; Dong, Wei ; Li, Wei ; Yu, Jun ; Wang, Jian ; Stærfeldt, Hans Henrik ; Wernersson, Rasmus ; Madsen, Lone B. ; Thomsen, Bo ; Hornhoj, Henrik ; Zhan, Bujie ; Wang, Xuegang ; Wang, Xuefei ; Bolund, Lars ; Brunak, Søren ; Yang, Huanming ; Bendixen, Christian ; Fredholm, Merete
in journal: Genome Biology (Online Edition) (ISSN: 1474-760X), issue: 4, 2007

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2007

 

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

Lagesen, Karin ; Hallin, Peter Fischer ; Rødland, Einar Andreas ; Stærfeldt, Hans Henrik ; Rognes, Torbjorn ; Ussery, David
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkm160), issue: 9, pages: 3100-08, 2007

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2007     |    DOI: http://dx.doi.org/10.1093/nar/gkm160

2006
 

FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB

Wernersson, Rasmus ; Rapacki, Kristoffer ; Stærfeldt, Hans Henrik ; Sackett, Peter Wad ; Mølgaard, Anne
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkl227), vol: 34, issue: SI, pages: 84-88, 2006

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2006     |    DOI: http://dx.doi.org/10.1093/nar/gkl227

2005
 

Genome Update: proteome comparisons

Binnewies, Tim Terence ; Hallin, Peter Fischer ; Stærfeldt, Hans Henrik ; Ussery, David
in journal: MICROBIOLOGY-SGM (ISSN: 1350-0872), pages: 1-4, 2005

Type: Editorial (Peer reviewed)

Status: Published     |    År: 2005

  PDF

Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing

Wernersson, Rasmus ; Schierup, M.H. ; Jorgensen, F.G. ; Gorodkin, J. ; Panitz, F. ; Stærfeldt, Hans Henrik ; Christensen, O.F. ; Mailund, T. ; Hornshoj, H. ; Klein, A. ; Wang, J. ; Liu, B. ; Hu, S.N. ; Dong, W. ; Li, W. ; Wong, G.K.S. ; Yu, J. ; Bendixen, C. ; Fredholm, M. ; Brunak, Søren ; Yang, H.M. ; Bolund, L.
in journal: BMC Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/1471-2164-6-70), vol: 6, pages: 70, 2005

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2005     |    DOI: http://dx.doi.org/10.1186/1471-2164-6-70