Jose Maria Gonzalez-Izarzugaza

Jose Maria Gonzalez-Izarzugaza

Lektor

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Integrative Systems Biology
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 017

2800 Kgs. Lyngby

Hjemmeside

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Publikationer
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2017
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Cutavirus in Cutaneous Malignant Melanoma

Mollerup, Sarah ; Fridholm, Helena ; Vinner, Lasse ; Kjartansdóttir, Kristín Rós ; Friis-Nielsen, Jens ; Asplund, Maria ; Herrera, Jose Romero ; Steiniche, Torben ; Mourier, Tobias ; Brunak, Søren ; Willerslev, Eske ; Gonzalez-Izarzugaza, Jose Maria ; Hansen, Anders Johannes ; Nielsen, Lars Peter
in journal: Emerging Infectious Diseases (ISSN: 1080-6040) (DOI: http://dx.doi.org/10.3201/eid2302.161564), vol: 23, issue: 2, pages: 363-365, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.3201/eid2302.161564

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Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Sibbesen, Jonas Andreas ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine González-Izarzugaza ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben N. ; Friborg, Rune M. ; Halager, Anders E. ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngreen, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Syed, Ali ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Börglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in journal: Nature (ISSN: 0028-0836) (DOI: http://dx.doi.org/10.1038/nature23264), vol: 548, pages: 87-91, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1038/nature23264

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Assembly and analysis of 100 full MHC haplotypes from the Danish population

Jensen, Jacob M. ; Villesen, Palle ; Friborg, Rune M. ; Mailund, Thomas ; Besenbacher, Søren ; Schierup, Mikkel H. ; Gonzalez-Izarzugaza, Jose Maria
in journal: Genome Research (ISSN: 1088-9051) (DOI: http://dx.doi.org/10.1101/gr.218891.116), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2017     |    DOI: http://dx.doi.org/10.1101/gr.218891.116

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Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

Gonzalez-Izarzugaza, Jose Maria ; Skov, Laurits ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Andreas Sibbesen, Jonas ; Liu, Siyang ; Villesen, Palle ; Belling, Kirstine González-Izarzugaza ; Theil Have, Christian ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben ; Friborg, Rune M. ; Halager, Anders E. ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Qaswar Ali Shah, Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in journal: P L o S Genetics (ISSN: 1553-7390) (DOI: http://dx.doi.org/10.1371/journal.pgen.1006834), vol: 13, issue: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pgen.1006834

2016
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wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases

Vazquez, Miguel ; Pons, Tirso ; Brunak, Søren ; Valencia, Alfonso ; Gonzalez-Izarzugaza, Jose Maria
in journal: Human Mutation (ISSN: 1059-7794) (DOI: http://dx.doi.org/10.1002/humu.22914), vol: 37, issue: 1, pages: 36-42, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1002/humu.22914

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Propionibacterium acnes: disease-causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing

Mollerup, Sarah ; Friis-Nielsen, Jens ; Vinner, Lasse ; Richter, Stine Raith ; Fridholm, Helena ; Herrera, Jose Romero ; Lund, Ole ; Brunak, Søren ; Gonzalez-Izarzugaza, Jose Maria ; Mourier, Tobias ; Nielsen, Lars Peter ; Hansen, Anders Johannes
in journal: Journal of Clinical Microbiology (ISSN: 0095-1137) (DOI: http://dx.doi.org/10.1128/jcm.02723-15), vol: 54, issue: 4, pages: 980-987, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1128/jcm.02723-15

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Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers

Friis-Nielsen, Jens ; Kjartansdóttir, Kristín Rós ; Mollerup, Sarah ; Asplund, Maria ; Mourier, Tobias ; Holm Jensen, Randi ; Arn Hansen, Thomas ; Rey-Iglesia, Alba ; Vinner, Lasse ; Fridholm, Helena ; Nielsen, Lars Peter ; Willerslev, Eske ; Sicheritz-Pontén, Thomas ; Lund, Ole ; Hansen, Anders Johannes ; Gonzalez-Izarzugaza, Jose Maria ; Brunak, Søren
in journal: Viruses (ISSN: 1999-4915) (DOI: http://dx.doi.org/10.3390/v8020053), vol: 8, issue: 53, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.3390/v8020053

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How compelling are the data for Epstein-Barr virus being a trigger for systemic lupus and other autoimmune diseases?

Draborg, Anette ; Gonzalez-Izarzugaza, Jose Maria ; Houen, Gunnar
in journal: Current Opinion in Rheumatology (ISSN: 1040-8711) (DOI: http://dx.doi.org/10.1097/BOR.0000000000000289), vol: 28, issue: 4, pages: 398-404, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1097/BOR.0000000000000289

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Species-independent identification of known and novel recurrent genomic entities in multiple cancer patients

Friis-Nielsen, Jens ; Gonzalez-Izarzugaza, Jose Maria ; Brunak, Søren
in journal: Human Genomics (Online) (ISSN: 1479-7364) (DOI: http://dx.doi.org/10.1186/s40246-016-0063-5), vol: 10, issue: Suppl. 1, 2016
Presented at:
Human Genome Meeting 2016, 2016, Houston, TX

Type: Conference abstract in journal (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1186/s40246-016-0063-5

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KinMutRF: a random forest classifier of sequence variants in the human protein kinase superfamily

Pons, Tirso ; Vazquez, Miguel ; Matey-Hernandez, María Luisa ; Brunak, Søren ; Valencia, Alfonso ; Gonzalez-Izarzugaza, Jose Maria
in journal: BMC Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/s12864-016-2723-1), vol: 17, issue: Suppl. 2, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1186/s12864-016-2723-1