Søren Brunak

Søren Brunak

Professor

DTU SUNDHEDSTEKNOLOGI
Institut for Sundhedsteknologi

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 016

2800 Kgs. Lyngby

Tlf.
Tlf.
Fax 45 93 15 85
E-mail sobr@dtu.dk
Hjemmeside

Få tilsendt vCard på e-mail.

Publikationer
Projekter
Loading

Publikationer rss feed

2020
  PDF

Conflicting associations between dietary patterns and changes of anthropometric traits across subgroups of middle-aged women and men

Jiang, Li ; Audouze, Karine ; Romero Herrera, Jose Alejandro ; Ängquist, Lars Henrik ; Kjærulff, Sonny Kim ; Izarzugaza, Jose M.G. ; Tjønneland, Anne ; Halkjær, Jytte ; Overvad, Kim ; Sørensen, Thorkild I.A. ; Brunak, Søren
in: Clinical Nutrition, vol: 39, issue: 1, pages: 265-275

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2020     |    DOI: https://doi.org/10.1016/j.clnu.2019.02.003

2019
  PDF

A Brief History of Protein Sorting Prediction

Nielsen, Henrik ; Tsirigos, Konstantinos D. ; Brunak, Søren ; von Heijne, Gunnar
in: Protein Journal, vol: 38, issue: 3, pages: 200-216

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1007/s10930-019-09838-3

 

Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022

Saunders, Gary ; Baudis, Michael ; Becker, Regina ; Beltran, Sergi ; Béroud, Christophe ; Birney, Ewan ; Brooksbank, Cath ; Brunak, Søren ; Van den Bulcke, Marc ; Drysdale, Rachel ; Capella-Gutierrez, Salvador ; Flicek, Paul ; Florindi, Francesco ; Goodhand, Peter ; Gut, Ivo ; Heringa, Jaap ; Holub, Petr ; Hooyberghs, Jef ; Juty, Nick ; Keane, Thomas M. ; Korbel, Jan O. ; Lappalainen, Ilkka ; Leskosek, Brane ; Matthijs, Gert ; Mayrhofer, Michaela Th. ; Metspalu, Andres ; Navarro, Arcadi ; Newhouse, Steven ; Nyrönen, Tommi ; Page, Angela ; Persson, Bengt ; Palotie, Aarno ; Parkinson, Helen ; Rambla, Jordi ; Salgado, David ; Steinfelder, Erik ; Swertz, Morris A ; Valencia, Alfonso ; Varma, Susheel ; Blomberg, Niklas ; Scollen, Serena
in: Nature Reviews. Genetics

Type: Comment/debate

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1038/s41576-019-0178-3

  PDF

Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries

Asplund, Maria ; Kjartansdóttir, Kristín Rós ; Mollerup, Sarah ; Vinner, Lasse ; Fridholm, Helena ; Herrera, José A. R. ; Friis-Nielsen, Jens ; Hansen, Thomas Arn ; Jensen, Randi Holm ; Nielsen, Ida Broman ; Richter, Stine Raith ; Rey-Iglesia, Alba ; Matey-Hernandez, Maria Luisa ; Alquezar-Planas, David E. ; Olsen, Pernille V. S. ; Sicheritz-Pontén, Thomas ; Willerslev, Eske ; Lund, Ole ; Brunak, Søren ; Mourier, Tobias ; Nielsen, Lars Peter ; Izarzugaza, Jose M. G. ; Hansen, Anders Johannes
in: Clinical Microbiology and Infection, vol: 25, issue: 10, pages: 1277-1285

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1016/j.cmi.2019.04.028

  PDF

Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: descriptive characteristics of the epidemiological studies within the IMI DIRECT Consortium

Koivula, Robert W. ; Forgie, Ian M. ; Kurbasic, Azra ; Viñuela, Ana ; Heggie, Alison ; Giordano, Giuseppe N. ; Hansen, Tue H. ; Hudson, Michelle ; Koopman, Anitra D. M. ; Rutters, Femke ; Siloaho, Maritta ; Allin, Kristine H. ; Brage, Søren ; Brorsson, Caroline A. ; Dawed, Adem Y. ; De Masi, Federico ; Groves, Christopher J. ; Kokkola, Tarja ; Mahajan, Anubha ; Perry, Mandy H. ; Rauh, Simone P. ; Ridderstråle, Martin ; Teare, Harriet J. A. ; Thomas, E. Louise ; Tura, Andrea ; Vestergaard, Henrik ; White, Tom ; Adamski, Jerzy ; Bell, Jimmy D. ; Beulens, Joline W. ; Brunak, Søren ; Dermitzakis, Emmanouil T. ; Froguel, Philippe ; Frost, Gary ; Gupta, Ramneek ; Hansen, Torben ; Hattersley, Andrew ; Jablonka, Bernd ; Kaye, Jane ; Laakso, Markku ; McDonald, Timothy J. ; Pedersen, Oluf ; Schwenk, Jochen M. ; Pavo, Imre ; Mari, Andrea ; McCarthy, Mark I. ; Ruetten, Hartmut ; Walker, Mark ; Pearson, Ewan ; Franks, Paul W. ; ,
in: Diabetologia, vol: 62, issue: 9, pages: 1601-1615

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1007/s00125-019-4906-1

  PDF

High-throughput sequencing-based investigation of viruses in human cancers by multi-enrichment approach

Mollerup, Sarah ; Asplund, Maria ; Friis-Nielsen, Jens ; Kjartansdóttir, Kristín Rós ; Fridholm, Helena ; Hansen, Thomas Arn ; Herrera, José Alejandro Romero ; Barnes, Christopher James ; Jensen, Randi Holm ; Richter, Stine Raith ; Nielsen, Ida Broman ; Pietroni, Carlotta ; Alquezar-Planas, David E. ; Rey-Iglesia, Alba ; Olsen, Pernille V. S. ; Rajpert-De Meyts, Ewa ; Groth-Pedersen, Line ; von Buchwald, Christian ; Jensen, David H. ; Gniadecki, Robert ; Høgdall, Estrid ; Langhoff, Jill Levin ; Pete, Imre ; Vereczkey, Ildikó ; Baranyai, Zsolt ; Dybkaer, Karen ; Johnsen, Hans Erik ; Steiniche, Torben ; Hokland, Peter ; Rosenberg, Jacob ; Baandrup, Ulrik ; Sicheritz-Pontén, Thomas ; Willerslev, Eske ; Brunak, Søren ; Lund, Ole ; Mourier, Tobias ; Vinner, Lasse ; Izarzugaza, Jose M. G. ; Nielsen, Lars Peter ; Hansen, Anders Johannes
in: Journal of Infectious Diseases, vol: 220, issue: 8, pages: 1312-1324

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1093/infdis/jiz318

 

Individual effects of gastric bypass surgery on longitudinal blood protein profiles: an IMI DIRECT study

Thomas, C.E. ; Haussler, R.S. ; Hong, M.-G. ; Raverdy, V. ; Dale, M. ; Vinuela, A. ; Canouil, M. ; Dermitzakis, E. T. ; Froguel, P. ; Brunak, Søren ; Pattou, F. ; Schwenk, J. M.
in: Diabetologia, vol: 62, issue: Suppl. 1, pages: S271-S271
Presented at:
55th Annual Meeting of the European-Association-for-the-Study-of-Diabetes (EASD)

Type: Conference abstract in journal (Peer reviewed)

Status: Published     |    År: 2019

 

Leveraging European infrastructures to access 1 million human genomes by 2022

Saunders, Gary ; Baudis, Michael ; Becker, Regina ; Beltran, Sergi ; Béroud, Christophe ; Birney, Ewan ; Brooksbank, Cath ; Brunak, Søren ; Van den Bulcke, Marc ; Drysdale, Rachel ; Capella-Gutierrez, Salvador ; Flicek, Paul ; Florindi, Francesco ; Goodhand, Peter ; Gut, Ivo ; Heringa, Jaap ; Holub, Petr ; Hooyberghs, Jef ; Juty, Nick ; Keane, Thomas M. ; Korbel, Jan O. ; Lappalainen, Ilkka ; Leskosek, Brane ; Matthijs, Gert ; Mayrhofer, Michaela Th. ; Metspalu, Andres ; Navarro, Arcadi ; Newhouse, Steven ; Nyrönen, Tommi ; Page, Angela ; Persson, Bengt ; Palotie, Aarno ; Parkinson, Helen ; Rambla, Jordi ; Salgado, David ; Steinfelder, Erik ; Swertz, Morris A. ; Valencia, Alfonso ; Varma, Susheel ; Blomberg, Niklas ; Scollen, Serena
in: Nature Reviews. Genetics, vol: 20, pages: 693-701

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1038/s41576-019-0156-9

  PDF

Linking glycemic dysregulation in diabetes to symptoms, comorbidities, and genetics through EHR data mining

Kirk, I.K. ; Simon, C. ; Banasik, K. ; Holm, P.C. ; Haue, A.D. ; Jensen, P.B. ; Jensen, L. Juhl ; Rodríguez, C.L. ; Pedersen, M.K. ; Eriksson, R. ; Andersen, H.U. ; Almdal, T. ; Bork-Jensen, J. ; Grarup, N. ; Borch-Johnsen, K. ; Pedersen, O. ; Pociot, F. ; Hansen, T. ; Bergholdt, R. ; Rossing, P. ; Brunak, Søren
in: eLife, vol: 8

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.7554/elife.44941

  PDF

SignalP 5.0 improves signal peptide predictions using deep neural networks

Almagro Armenteros, Jose Juan ; Tsirigos, Konstantinos D. ; Sønderby, Casper Kaae ; Petersen, Thomas Nordahl ; Winther, Ole ; Brunak, Søren ; von Heijne, Gunnar ; Nielsen, Henrik
in: Nature Biotechnology, vol: 37, pages: 420-423

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1038/s41587-019-0036-z