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2019
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Resistance gene-directed genome mining of 50 Aspergillus species

Kjærbølling, Inge ; Vesth, Tammi ; Andersen, Mikael R.
in: mSystems, vol: 4, issue: 4

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1128/mSystems.00085-19

2018
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Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species

Kjærbølling, Inge ; Vesth, Tammi C. ; Frisvad, Jens C. ; Nybo, Jane L. ; Theobald, Sebastian ; Kuo, Alan ; Bowyer, Paul ; Matsuda, Yudai ; Mondo, Stephen ; Lyhne, Ellen K. ; Kogle, Martin E. ; Clum, Alicia ; Lipzen, Anna ; Salamov, Asaf ; Ngan, Chew Yee ; Daum, Chris ; Chiniquy, Jennifer ; Barry, Kerrie ; LaButti, Kurt ; Haridas, Sajeet ; Simmons, Blake A. ; Magnuson, Jon K. ; Mortensen, Uffe H. ; Larsen, Thomas O. ; Grigoriev, Igor V. ; Baker, Scott E. ; Andersen, Mikael R.
in: Proceedings of the National Academy of Sciences of the United States of America, vol: 115, issue: 4, pages: E753-E761

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1073/pnas.1715954115

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Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

Vesth, Tammi Camilla ; Nybo, Jane L ; Theobald, Sebastian ; Frisvad, Jens Christian ; Larsen, Thomas Ostenfeld ; Nielsen, Kristian Fog ; Hoof, Jakob Blæsbjerg ; Brandl, Julian ; Salamov, Asaf ; Riley, Robert ; Gladden, John M ; Phatale, Pallavi ; Nielsen, Morten T. ; Lyhne, Ellen K. ; Kogle, Martin Engelhard ; Strasser, Kimchi ; McDonnell, Erin ; Barry, Kerrie ; Clum, Alicia ; Chen, Cindy ; LaButti, Kurt ; Haridas, Sajeet ; Nolan, Matt ; Sandor, Laura ; Kuo, Alan ; Lipzen, Anna ; Hainaut, Matthieu ; Drula, Elodie ; Tsang, Adrian ; Magnuson, Jon K ; Henrissat, Bernard ; Wiebenga, Ad ; Simmons, Blake A ; Mäkelä, Miia R ; de Vries, Ronald P ; Grigoriev, Igor V ; Mortensen, Uffe Hasbro ; Baker, Scott E ; Andersen, Mikael Rørdam
in: Nature Genetics, vol: 50, pages: 1688–1695

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41588-018-0246-1

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The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi

Aguilar-Pontes, M. V. ; Brandl, J. ; McDonnell, E. ; Strasser, K. ; Nguyen, T.T.M. ; Riley, R. ; Mondo, S. ; Salamov, A. ; Nybo, J.L. ; Vesth, T.C. ; Grigoriev, I.V. ; Andersen, M.R. ; Tsang, A. ; de Vries, R.P.
in: Studies in Mycology, vol: 91, pages: 61-78

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.simyco.2018.10.001

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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication

Theobald, Sebastian ; Vesth, Tammi C. ; Rendsvig, Jakob Kræmmer ; Nielsen, Kristian Fog ; Riley, Robert ; de Abreu, Lucas Magalhães ; Salamov, Asaf ; Frisvad, Jens Christian ; Larsen, Thomas Ostenfeld ; Andersen, Mikael Rørdam ; Hoof, Jakob Blæsbjerg
in: Scientific Reports, vol: 8

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41598-018-36561-3

2017
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Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

de Vries, Ronald P. ; Riley, Robert ; Wiebenga, Ad ; Aguilar-Osorio, Guillermo ; Amillis, Sotiris ; Uchima, Cristiane Akemi ; Anderluh, Gregor ; Asadollahi, Mojtaba ; Askin, Marion ; Barry, Kerrie ; Battaglia, Evy ; Bayram, Özgür ; Benocci, Tiziano ; Braus-Stromeyer, Susanna A. ; Caldana, Camila ; Cánovas, David ; Cerqueira, Gustavo C. ; Chen, Fusheng ; Chen, Wanping ; Choi, Cindy ; Clum, Alicia ; dos Santos, Renato Augusto Corrêa ; de Lima Damásio, André Ricardo ; Diallinas, George ; Emri, Tamás ; Fekete, Erzsébet ; Flipphi, Michel ; Freyberg, Susanne ; Gallo, Antonia ; Gournas, Christos ; Habgood, Rob ; Hainaut, Matthieu ; Harispe, María Laura ; Henrissat, Bernard ; Hildén, Kristiina S. ; Hope, Ryan ; Hossain, Abeer ; Karabika, Eugenia ; Karaffa, Levente ; Karányi, Zsolt ; Kraševec, Nada ; Kuo, Alan ; Kusch, Harald ; LaButti, Kurt ; Lagendijk, Ellen L. ; Lapidus, Alla ; Levasseur, Anthony ; Lindquist, Erika ; Lipzen, Anna ; Logrieco, Antonio F. ; MacCabe, Andrew ; Mäkelä, Miia R. ; Malavazi, Iran ; Melin, Petter ; Meyer, Vera ; Mielnichuk, Natalia ; Miskei, Márton ; Molnár, Ákos P. ; Mulé, Giuseppina ; Ngan, Chew Yee ; Orejas, Margarita ; Orosz, Erzsébet ; Ouedraogo, Jean Paul ; Overkamp, Karin M. ; Park, Hee Soo ; Perrone, Giancarlo ; Piumi, Francois ; Punt, Peter J. ; Ram, Arthur F. J. ; Ramón, Ana ; Rauscher, Stefan ; Record, Eric ; Riaño-Pachón, Diego Mauricio ; Robert, Vincent A.R.G. ; Röhrig, Julian ; Ruller, Roberto ; Salamov, Asaf ; Salih, Nadhira S. ; Samson, Rob A. ; Sándor, Erzsébet ; Sanguinetti, Manuel ; Schütze, Tabea ; Sepčić, Kristina ; Shelest, Ekaterina ; Sherlock, Gavin ; Sophianopoulou, Vicky ; Squina, Fabio M. ; Sun, Jian-Hui ; Susca, Antonia ; Todd, Richard B. ; Tsang, Adrian ; Unkles, Shiela E. ; van de Wiele, Nathalie ; van Rossen-Uffink, Diana ; de Castro Oliveira, Juliana Velasco ; Vesth, Tammi Camilla ; Visser, Jaap ; Yu, Jae-Hyuk ; Zhou, Miaomiao ; Andersen, Mikael Rørdam ; Archer, David B. ; Baker, Scott E. ; Benoit, Isabelle ; Brakhage, Axel A. ; Braus, Gerhard H. ; Fischer, Reinhard ; Frisvad, Jens Christian ; Goldman, Gustavo H. ; Houbraken, Jos ; Oakley, Berl R. ; Pócsi, István ; Scazzocchio, Claudio ; Seiboth, Bernhard ; vanKuyk, Patricia A. ; Wortman, Jennifer Russo ; Dyer, Paul S. ; Grigoriev, Igor V.
in: Genome Biology (Online Edition), vol: 18

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1186/s13059-017-1151-0

2016
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FunGeneClusterS

Vesth, Tammi Camilla ; Brandl, Julian ; Andersen, Mikael Rørdam
in: Synthetic and Systems Biotechnology, vol: 1, issue: 2, pages: 122-129

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: https://doi.org/10.1016/j.synbio.2016.01.002

2013
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Amino Acid Usage Is Asymmetrically Biased in AT- and GC-Rich Microbial Genomes.

Bohlin, Jon ; Brynildsrud, Ola Brønstad ; Vesth, Tammi Camilla ; Skjerve, Eystein ; Ussery, David
in: PLOS ONE, vol: 8, issue: 7

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2013     |    DOI: https://doi.org/10.1371/journal.pone.0069878

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CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics.

Vesth, Tammi Camilla ; Lagesen, Karin ; Acar, Öncel ; Ussery, David
in: P L o S One, vol: 8, issue: 4, pages: e60120

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2013