Publications
Projects
Activities
Courses
DTU news
Loading

Publications rss feed

2018
  PDF

Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication

Theobald, Sebastian ; Vesth, Tammi C. ; Rendsvig, Jakob Kræmmer ; Nielsen, Kristian Fog ; Riley, Robert ; de Abreu, Lucas Magalhães ; Salamov, Asaf ; Frisvad, Jens Christian ; Larsen, Thomas Ostenfeld ; Andersen, Mikael Rørdam ; Hoof, Jakob Blæsbjerg
in: Scientific Reports, vol: 8

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41598-018-36561-3

2017
  PDF

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

de Vries, Ronald P. ; Riley, Robert ; Wiebenga, Ad ; Aguilar-Osorio, Guillermo ; Amillis, Sotiris ; Uchima, Cristiane Akemi ; Anderluh, Gregor ; Asadollahi, Mojtaba ; Askin, Marion ; Barry, Kerrie ; Battaglia, Evy ; Bayram, Özgür ; Benocci, Tiziano ; Braus-Stromeyer, Susanna A. ; Caldana, Camila ; Cánovas, David ; Cerqueira, Gustavo C. ; Chen, Fusheng ; Chen, Wanping ; Choi, Cindy ; Clum, Alicia ; dos Santos, Renato Augusto Corrêa ; de Lima Damásio, André Ricardo ; Diallinas, George ; Emri, Tamás ; Fekete, Erzsébet ; Flipphi, Michel ; Freyberg, Susanne ; Gallo, Antonia ; Gournas, Christos ; Habgood, Rob ; Hainaut, Matthieu ; Harispe, María Laura ; Henrissat, Bernard ; Hildén, Kristiina S. ; Hope, Ryan ; Hossain, Abeer ; Karabika, Eugenia ; Karaffa, Levente ; Karányi, Zsolt ; Kraševec, Nada ; Kuo, Alan ; Kusch, Harald ; LaButti, Kurt ; Lagendijk, Ellen L. ; Lapidus, Alla ; Levasseur, Anthony ; Lindquist, Erika ; Lipzen, Anna ; Logrieco, Antonio F. ; MacCabe, Andrew ; Mäkelä, Miia R. ; Malavazi, Iran ; Melin, Petter ; Meyer, Vera ; Mielnichuk, Natalia ; Miskei, Márton ; Molnár, Ákos P. ; Mulé, Giuseppina ; Ngan, Chew Yee ; Orejas, Margarita ; Orosz, Erzsébet ; Ouedraogo, Jean Paul ; Overkamp, Karin M. ; Park, Hee Soo ; Perrone, Giancarlo ; Piumi, Francois ; Punt, Peter J. ; Ram, Arthur F. J. ; Ramón, Ana ; Rauscher, Stefan ; Record, Eric ; Riaño-Pachón, Diego Mauricio ; Robert, Vincent A.R.G. ; Röhrig, Julian ; Ruller, Roberto ; Salamov, Asaf ; Salih, Nadhira S. ; Samson, Rob A. ; Sándor, Erzsébet ; Sanguinetti, Manuel ; Schütze, Tabea ; Sepčić, Kristina ; Shelest, Ekaterina ; Sherlock, Gavin ; Sophianopoulou, Vicky ; Squina, Fabio M. ; Sun, Jian-Hui ; Susca, Antonia ; Todd, Richard B. ; Tsang, Adrian ; Unkles, Shiela E. ; van de Wiele, Nathalie ; van Rossen-Uffink, Diana ; de Castro Oliveira, Juliana Velasco ; Vesth, Tammi Camilla ; Visser, Jaap ; Yu, Jae-Hyuk ; Zhou, Miaomiao ; Andersen, Mikael Rørdam ; Archer, David B. ; Baker, Scott E. ; Benoit, Isabelle ; Brakhage, Axel A. ; Braus, Gerhard H. ; Fischer, Reinhard ; Frisvad, Jens Christian ; Goldman, Gustavo H. ; Houbraken, Jos ; Oakley, Berl R. ; Pócsi, István ; Scazzocchio, Claudio ; Seiboth, Bernhard ; vanKuyk, Patricia A. ; Wortman, Jennifer Russo ; Dyer, Paul S. ; Grigoriev, Igor V.
in: Genome Biology (Online Edition), vol: 18

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1186/s13059-017-1151-0

  PDF

Expansions and reductions in fungal primary metabolism studied across 100 fungal species

Brandl, Julian ; Rasmussen, Jane Lind Nybo ; Vesth, Tammi Camilla ; Andersen, Mikael Rørdam
Presented at:
29th Fungal Genetics Conference

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    Year: 2017

  PDF

Genetic diversity of 100+ Aspergillus species - the aspMine analysis resource

Vesth, Tammi Camilla ; Rasmussen, Jane Lind Nybo ; Theobald, Sebastian ; De Vries, R.P ; Grigoriev, Igor V. ; Baker, S. E. ; Andersen, Mikael Rørdam
Presented at:
29th Fungal Genetics Conference

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    Year: 2017

  PDF

Genetic diversity of 100+ Aspergillus species: The aspMine analysis resource

Vesth, Tammi Camilla ; Rasmussen, Jane Lind Nybo ; Theobald, Sebastian ; Kjærbølling, Inge ; Frisvad, Jens Christian ; Nielsen, Kristian Fog ; Lyhne, Ellen Kirstine ; Kogle, Martin Engelhard ; Kuo, Alan ; Riley, Robert ; de Vries, Ronald P. ; Grigoriev, Igor V. ; Mortensen, Uffe Hasbro ; Henrissat, Bernard ; Baker, Scott E. ; Andersen, Mikael Rørdam
Presented at:
Comparative genomics of eukaryotic microbes: Dissecting sources of evolutionary diversity

Type: Poster (Peer reviewed)

Status: Published     |    Year: 2017

  PDF

Genus level analysis of secondary metabolism reveals the origin of Aspergillus hybrid NRPS-PKS gene clusters

Theobald, Sebastian ; Vesth, Tammi Camilla ; Rasmussen, Jane Lind Nybo ; Kjærbølling, Inge ; Frisvad, Jens Christian ; Nielsen, Kristian Fog ; Larsen, Thomas Ostenfeld ; Grigoriev, Igor V. ; Salamov, Asaf ; Mortensen, Uffe Hasbro ; Baker, Scott E. ; Andersen, Mikael Rørdam
Presented at:
14th International Aspergillus Meeting

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    Year: 2017

  PDF

What drives speciation? Examination into the evolutionary events of more than 100 Aspergillus species

Rasmussen, Jane Lind Nybo ; Vesth, Tammi Camilla ; Theobald, Sebastian ; Kjærbølling, Inge ; Frisvad, Jens Christian ; Larsen, Thomas Ostenfeld ; Riley, Robert ; Salamov, A. ; Grigoriev, I. V. ; Baker, S. E. ; Andersen, Mikael Rørdam
Presented at:
29th Fungal Genetics Conference

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    Year: 2017

2016
 

Approaches for Comparative Genomics in Aspergillus and Penicillium

Rasmussen, Jane Lind Nybo ; Theobald, Sebastian ; Brandl, Julian ; Vesth, Tammi Camilla ; Andersen, Mikael Rørdam
part of: Aspergillus and Penicillium in the Post-genomic Era, 2016, Caister Academic Press

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2016

  PDF

aspMine - online comparative analysis of species from the Aspergillus genus

Vesth, Tammi Camilla ; Rasmussen, Jane Lind Nybo ; Theobald, Sebastian ; de Vries, Ronald P. ; Grigoriev, Igor V. ; Baker, Scott E. ; Andersen, Mikael Rørdam
part of: Book of abstracts from the 13th European Conference on Fungal Genetics, pages: 71-71, 2016
Presented at:
13th European Conference on Fungal Genetics

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    Year: 2016