DTU Bioengineering
DTU Biosustain
Nikolaus Sonnenschein

Nikolaus Sonnenschein

Associate Professor

Department of Biotechnology and Biomedicine

SB-Computer-Aided-Biotechnology

Technical University of Denmark

Søltofts Plads

Building 223, room 224

2800 Kgs. Lyngby

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2018
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MARSI: metabolite analogues for rational strain improvement

Cardoso, João G. R. ; Zeidan, Ahmad A ; Jensen, Kristian ; Sonnenschein, Nikolaus ; Neves, Ana Rute ; Herrgård, Markus J
in: Bioinformatics, vol: 34, issue: 13, pages: 2319-2321

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1093/bioinformatics/bty108

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Microbial Methylotrophic Metabolism: Recent Metabolic Modeling Efforts and Their Applications In Industrial Biotechnology

Lieven, Christian ; Herrgård, Markus J. ; Sonnenschein, Nikolaus
in: Biotechnology Journal, vol: 13, issue: 8

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1002/biot.201800011

2017
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DD-DeCaF: Data-Driven Design of Cell Factories and Communities

Beber, Moritz Emanuel ; Dannaher, Danny ; Fodor, Matyas ; Galkina, Svetlana ; Redestig, Nils Henning ; Sonnenschein, Nikolaus ; Herrgard, Markus
part of: Book of Abstracts, Sustain 2017, 2017
Presented at:
Sustain 2017

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    Year: 2017

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Memote - The genome-scale metabolic model test suite

Lieven, Christian ; Beber, Moritz Emanuel ; Sonnenschein, Nikolaus
part of: Book of Abstracts, Sustain 2017, 2017
Presented at:
Sustain 2017

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    Year: 2017

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Systems biology solutions for biochemical production challenges

Hansen, Anne Sofie Lærke ; Lennen, Rebecca M ; Sonnenschein, Nikolaus ; Herrgard, Markus
in: Current Opinion in Biotechnology, vol: 45, pages: 85-91

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1016/j.copbio.2016.11.018

2016
 

Engineering an NADPH/NADPRedox Biosensor in Yeast

Zhang, Jie ; Sonnenschein, Nikolaus ; Pihl, Thomas Peter Boye ; Pedersen, Kasper Rud ; Jensen, Michael Krogh ; Keasling, Jay
in: A C S Synthetic Biology, vol: 5, issue: 12, pages: 1546–1556

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: https://doi.org/10.1021/acssynbio.6b00135

 

Genome-Scale Models

Bergdahl, Basti ; Sonnenschein, Nikolaus ; Machado, Daniel ; Herrgard, Markus ; Förster, Jochen
part of: Fundamental Bioengineering, pages: 143-182, 2015, Weinheim, Germany

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: https://doi.org/10.1002/9783527697441.ch06

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Optlang: An algebraic modeling language for mathematical optimization

Jensen, Kristian ; Cardoso, Joao ; Sonnenschein, Nikolaus
in: The Journal of Open Source Software

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: https://doi.org/10.21105/joss.00139

2015
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Analysis of genetic variation and potential applications in genome-scale metabolic modeling

Cardoso, Joao ; Andersen, Mikael Rørdam ; Herrgard, Markus ; Sonnenschein, Nikolaus
in: Frontiers in Bioengineering and Biotechnology, vol: 3, issue: 13

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: https://doi.org/10.3389/fbioe.2015.00013

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Do genome-scale models need exact solvers or clearer standards?

Ebrahim, A. ; Almaas, E. ; Bauer, E. ; Bordbar, A. ; Burgard, A. P. ; Chang, R. L. ; Drager, A. ; Famili, I. ; Feist, A. M. ; Fleming, R. M. ; Fong, S. S. ; Hatzimanikatis, V. ; Herrgard, M. J. ; Holder, A. ; Hucka, M. ; Hyduke, D. ; Jamshidi, N. ; Lee, Sang Yup ; Le Novere, N. ; Lerman, J. A. ; Lewis, Nathan ; Ma, D. ; Mahadevan, R. ; Maranas, C. ; Nagarajan, H. ; Navid, A. ; Nielsen, Jens ; Nielsen, L. K. ; Nogales, J. ; Noronha, A. ; Pal, C. ; Palsson, Bernhard ; Papin, J. A. ; Patil, Kiran R. ; Price, N. D. ; Reed, J. L. ; Saunders, M. ; Senger, R. S. ; Sonnenschein, Nikolaus ; Sun, Yuekai ; Thiele, I.
in: Molecular Systems Biology, vol: 11, issue: 10

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2015     |    DOI: https://doi.org/10.15252/msb.20156157