IT Service
DTU Bioinformatik
Jon Ison

Jon Ison

IT Service

Technical University of Denmark

Kemitorvet

Building 208, room 013

2800 Kgs. Lyngby

Request a vCard via e-mail.

Publications
Loading

Publications rss feed

2019
  PDF

Automated workflow composition in mass spectrometry-based proteomics

Palmblad, Magnus ; Lamprecht, Anna Lena ; Ison, Jon ; Schwämmle, Veit
in: Bioinformatics, vol: 35, issue: 4, pages: 656-664

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1093/bioinformatics/bty646

 

One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science

Tsiamis, Vasileios ; Ioan Ienasescu, Hans ; Gabrielaitis, Dovydas ; Palmblad, Magnus ; Schwämmle, Veit ; Ison, Jon
in: Journal of Proteome Research

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2019     |    DOI: https://doi.org/10.1021/acs.jproteome.9b00219

  PDF

The bio.tools registry of software tools and data resources for the life sciences

Ison, Jon ; Ienasescu, Hans ; Chmura, Piotr Jaroslaw ; Rydza, Emil Karol ; Menager, Herve ; Kalaš, Matuš ; Schwammle, Veit ; Gruning, Björn ; Beard, Niall ; Lopez, Rodrigo ; Duvaud, Severine ; Stockinger, Heinz ; Persson, Bengt ; Vařekova, Radka Svobodova ; Raček, Tomaš ; Vondrašek, Jiři ; Peterson, Hedi ; Salumets, Ahto ; Jonassen, Inge ; Hooft, Rob ; Nyronen, Tommi ; Valencia, Alfonso ; Capella, Salvador ; Gelpi, Josep ; Zambelli, Federico ; Savakis, Babis ; Leskošek, Brane ; Rapacki, Kristoffer ; Blanchet, Christophe ; Jimenez, Rafael ; Oliveira, Arlindo ; Vriend, Gert ; Collin, Olivier ; Van Helden, Jacques ; Løngreen, Peter ; Brunak, Søren
in: Genome Biology, vol: 20, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1186/s13059-019-1772-6

2018
 

Automated composition of scientific workflows in mass spectrometry-based proteomics

Lamprecht, Anna Lena ; Palmblad, Magnus ; Ison, Jon ; Schwammle, Veit
part of: Proceedings of 14th International Conference on eScience, pages: 360-361, 2019, IEEE
Presented at:
14th IEEE International Conference on eScience, e-Science 2018

Type: Article in proceedings (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1109/eScience.2018.00098

2017
  PDF

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

McMurry, Julie A ; Juty, Nick ; Blomberg, Niklas ; Burdett, Tony ; Conlin, Tom ; Conte, Nathalie ; Courtot, Mélanie ; Deck, John ; Dumontier, Michel ; Fellows, Donal K ; Gonzalez-Beltran, Alejandra ; Gormanns, Philipp ; Grethe, Jeffrey ; Hastings, Janna ; Hériché, Jean-Karim ; Hermjakob, Henning ; Ison, Jon ; Jimenez, Rafael C. ; Jupp, Simon ; Kunze, John ; Laibe, Camille ; Le Novère, Nicolas ; Malone, James ; Martin, Maria Jesus ; McEntyre, Johanna R. ; Morris, Chris ; Muilu, Juha ; Müller, Wolfgang ; Rocca-Serra, Philippe ; Sansone, Susanna-Assunta ; Sariyar, Murat ; Snoep, Jacky L. ; Soiland-Reyes, Stian ; Stanford, Natalie J. ; Swainston, Neil ; Washington, Nicole ; Williams, Alan R. ; Wimalaratne, Sarala M. ; Winfree, Lilly M. ; Wolstencroft, Katherine ; Goble, Carole ; Mungall, Christopher J ; Haendel, Melissa A ; Parkinson, Helen
in: P L o S Biology, vol: 15, issue: 6

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1371/journal.pbio.2001414

  PDF

ReGaTE: Registration of Galaxy Tools in Elixir

Doppelt-Azeroual, Olivia ; Mareuil, Fabien ; Deveaud, Eric ; Kalas, Matús ; Soranzo, Nicola ; van den Beek, Marius ; Gruening, Bjoern ; Ison, Jon ; Ménager, Hervé
in: GigaScience, vol: 6, issue: 6, pages: 1-4

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1093/gigascience/gix022

  PDF

Using bio.tools to generate and annotate workbench tool descriptions

Hillion, Kenzo-Hugo ; Kuzmin, Ivan ; Khodak, Anton ; Rasche, Eric ; Crusoe, Michael ; Peterson, Hedi ; Ison, Jon ; Ménager, Hervé
in: F1000Research, vol: 6

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.12688/f1000research.12974.1

2016
  PDF

Tools and data services registry

Ison, Jon ; Rapacki, Kristoffer ; Ménager, Hervé ; Kalaš, Matúš ; Rydza, Emil Karol ; Chmura, Piotr Jaroslaw ; Anthon, Christian ; Beard, Niall ; Berka, Karel ; Bolser, Dan ; Booth, Tim ; Bretaudeau, Anthony ; Brezovsky, Jan ; Casadio, Rita ; Cesareni, Gianni ; Coppens, Frederik ; Cornell, Michael ; Cuccuru, Gianmauro ; Davidsen, Kristian ; Vedova, Gianluca Della ; Dogan, Tunca ; Doppelt-Azeroual, Olivia ; Emery, Laura ; Gasteiger, Elisabeth ; Gatter, Thomas ; Goldberg, Tatyana ; Grosjean, Marie ; Grüning, Björn ; Helmer-Citterich, Manuela ; Ienasescu, Hans ; Ioannidis, Vassilios ; Jespersen, Martin Closter ; Jimenez, Rafael ; Juty, Nick ; Juvan, Peter ; Koch, Maximilian ; Laibe, Camille ; Li, Jing-Woei ; Licata, Luana ; Mareuil, Fabien ; Mičetić, Ivan ; Friborg, Rune Møllegaard ; Moretti, Sebastien ; Morris, Chris ; Möller, Steffen ; Nenadic, Aleksandra ; Peterson, Hedi ; Profiti, Giuseppe ; Rice, Peter ; Romano, Paolo ; Roncaglia, Paola ; Saidi, Rabie ; Schafferhans, Andrea ; Schwämmle, Veit ; Smith, Callum ; Sperotto, Maria Maddalena ; Stockinger, Heinz ; Vařeková, Radka Svobodová ; Tosatto, Silvio C. E. ; de la Torre, Victor ; Uva, Paolo ; Via, Allegra ; Yachdav, Guy ; Zambelli, Federico ; Vriend, Gert ; Rost, Burkhard ; Parkinson, Helen ; Løngreen, Peter ; Brunak, Søren
in: Nucleic acids research, vol: 44, issue: D1, pages: D38-D47

Type: Journal article (Peer reviewed)

Status: E-pub ahead of print     |    Year: 2016     |    DOI: https://doi.org/10.1093/nar/gkv1116

  PDF

Using registries to integrate bioinformatics tools and services into workbench environments

Ménager, Hervé ; Kalaš, Matúš ; Rapacki, Kristoffer ; Ison, Jon
in: International Journal on Software Tools for Technology Transfer, vol: 18, issue: 6, pages: 581-586

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016     |    DOI: https://doi.org/10.1007/s10009-015-0392-z