DTU Sundhedsteknologi
DTU Bioinformatik
Ramneek Gupta

Ramneek Gupta

Gruppeleder, Lektor

Institut for Sundhedsteknologi

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 021

2800 Kgs. Lyngby

Tlf.
Tlf.
Mobil
Fax 45 93 15 85
E-mail ramg@dtu.dk
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2019
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Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: descriptive characteristics of the epidemiological studies within the IMI DIRECT Consortium

Koivula, Robert W. ; Forgie, Ian M. ; Kurbasic, Azra ; Viñuela, Ana ; Heggie, Alison ; Giordano, Giuseppe N. ; Hansen, Tue H. ; Hudson, Michelle ; Koopman, Anitra D. M. ; Rutters, Femke ; Siloaho, Maritta ; Allin, Kristine H. ; Brage, Søren ; Brorsson, Caroline A. ; Dawed, Adem Y. ; De Masi, Federico ; Groves, Christopher J. ; Kokkola, Tarja ; Mahajan, Anubha ; Perry, Mandy H. ; Rauh, Simone P. ; Ridderstråle, Martin ; Teare, Harriet J. A. ; Thomas, E. Louise ; Tura, Andrea ; Vestergaard, Henrik ; White, Tom ; Adamski, Jerzy ; Bell, Jimmy D. ; Beulens, Joline W. ; Brunak, Søren ; Dermitzakis, Emmanouil T. ; Froguel, Philippe ; Frost, Gary ; Gupta, Ramneek ; Hansen, Torben ; Hattersley, Andrew ; Jablonka, Bernd ; Kaye, Jane ; Laakso, Markku ; McDonald, Timothy J. ; Pedersen, Oluf ; Schwenk, Jochen M. ; Pavo, Imre ; Mari, Andrea ; McCarthy, Mark I. ; Ruetten, Hartmut ; Walker, Mark ; Pearson, Ewan ; Franks, Paul W. ; ,
in: Diabetologia

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2019     |    DOI: https://doi.org/10.1007/s00125-019-4906-1

 

Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008

Højfeldt, Sofie G. ; Wolthers, Benjamin O. ; Tulstrup, Morten ; Abrahamsson, Jonas ; Gupta, Ramneek ; Harila-Saari, Arja ; Heyman, Mats ; Henriksen, Louise T. ; Jónsson, Òlafur G. ; Lähteenmäki, Päivi M. ; Lund, Bendik ; Pruunsild, Kaie ; Vaitkeviciene, Goda ; Schmiegelow, Kjeld ; Albertsen, Birgitte K.
in: British Journal of Haematology, vol: 184, issue: 3, pages: 405-417

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1111/bjh.15660

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The oncoprotein TBX3 is controlling severity in experimental arthritis

Sardar, Samra ; Kerr, Alish ; Vaartjes, Daniëlle ; Moltved, Emilie Riis ; Karosiene, Edita ; Gupta, Ramneek ; Andersson, Åsa
in: Arthritis Research & Therapy, vol: 21, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1186/s13075-018-1797-3

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Trypsin encoding PRSS1-PRSS2 variation influence the risk of asparaginase-associated pancreatitis in children with acute lymphoblastic leukemia: a Ponte di Legno toxicity working group report

Wolthers, Benjamin O. ; Frandsen, Thomas L. ; Patel, Chirag J ; Abaji, Rachid ; Attarbaschi, Andishe ; Barzilai, Shlomit ; Colombini, Antonella ; Escherich, Gabriele ; Grosjean, Marie ; Krajinovic, Maja ; Larsen, Eric ; Liang, Der-Cherng ; Möricke, Anja ; Rasmussen, Kirsten K. ; Samarasinghe, Sujith ; Silverman, Lewis B. ; van der Sluis, Inge M. ; Stanulla, Martin ; Tulstrup, Morten ; Yadav, Rachita ; Yang, Wenjian ; Zapotocka, Ester ; Gupta, Ramneek ; Schmiegelow, Kjeld
in: Haematologica, vol: 104, issue: 3, pages: 556-563

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.3324/haematol.2018.199356

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Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial

Roager, Henrik Munch ; Vogt, Josef Korbinian ; Kristensen, Mette ; Hansen, Lea Benedicte S ; Ibrügger, Sabine ; Mærkedahl, Rasmus B ; Bahl, Martin Iain ; Lind, Mads Vendelbo ; Nielsen, Rikke Linnemann ; Frøkiær, Hanne ; Gøbel, Rikke Juul ; Landberg, Rikard ; Ross, Alastair B ; Brix, Susanne ; Holck, Jesper ; Meyer, Anne S. ; Sparholt, Morten H ; Christensen, Anders F ; Carvalho, Vera ; Holst, Jens Juul ; Rumessen, Jüri Johannes ; Linneberg, Allan ; Sicheritz-Pontén, Thomas ; Dalgaard, Marlene Danner ; Blennow, Andreas ; Frandsen, Henrik Lauritz ; Villas-Bôas, Silas Granato ; Kristiansen, Karsten ; Vestergaard, Henrik ; Hansen, Torben ; Ekstrøm, Claus T ; Ritz, Christian ; Nielsen, Henrik Bjørn ; Pedersen, Oluf Borbye ; Gupta, Ramneek ; Lauritzen, Lotte ; Licht, Tine Rask
in: Gut, vol: 68, issue: 1, pages: 83-93

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1136/gutjnl-2017-314786

2018
 

Accurate genotyping across variant classes and lengths using variant graphs

Sibbesen, Jonas Andreas ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Dam-Als, Thomas ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben ; Friborg, Rune M. ; Halager, Anders Egerup ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick ; Ali , Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in: Nature Genetics

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1038/s41588-018-0145-5

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A low-gluten diet induces changes in the intestinal microbiome of healthy Danish adults

Hansen, Lea B. S. ; Roager, Henrik M. ; Søndertoft, Nadja B. ; Gøbel, Rikke J. ; Kristensen, Mette ; Vallès-Colomer, Mireia ; Vieira-Silva, Sara ; Ibrügger, Sabine ; Lind, Mads V. ; Mærkedahl, Rasmus B. ; Bahl, Martin Iain ; Madsen, Mia L ; Havelund, Jesper ; Falony, Gwen ; Tetens, Inge ; Nielsen, Trine ; Allin, Kristine H. ; Frandsen, Henrik L ; Hartmann, Bolette ; Holst, Jens Juul ; Sparholt, Morten H. ; Holck, Jesper ; Blennow, Andreas ; Moll, Janne Marie ; Meyer, Anne S. ; Hoppe, Camilla ; Poulsen, Jørgen H. ; Carvalho, Vera ; Sagnelli, Domenico ; Dalgaard, Marlene Danner ; Christensen, Anders F. ; Lydolph, Magnus Christian ; Ross, Alastair B ; Villas-Bôas, Silas ; Brix, Susanne ; Sicheritz-Pontén, Thomas ; Buschard, Karsten ; Linneberg, Allan ; Rumessen, Jüri J. ; Ekstrøm, Claus T. ; Ritz, Christian ; Kristiansen, Karsten ; Nielsen, H. Bjørn ; Vestergaard, Henrik ; Færgeman, Nils J. ; Raes, Jeroen ; Frøkiær, Hanne ; Hansen, Torben ; Gupta, Ramneek ; Licht, Tine Rask ; Pedersen, Oluf
in: Nature Communications, vol: 9, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1038/s41467-018-07019-x

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Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

Matey-Hernandez, María Luisa ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Andreas Sibbesen, Jonas ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; Beusekom, Johan v. ; Espeseth, Thomas ; Flindt, Esben N. ; Friborg, Rune M. ; Halager, Anders Egerup ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Ali , Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide ; Izarzugaza, Jose M. G.
in: B M C Bioinformatics, vol: 19

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1186/s12859-018-2239-6

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Integrative data analysis of genotype, microbiome and metabolomics for prediction of response to diet for improved metabolic health

Nielsen, Rikke Linnemann ; Helenius, Marianne ; Muktupavela, Rasa ; Jensen, Cecilia Bang ; Hansen, Lea Benedicte Skov ; Roager, Henrik Munch ; Søndertoft, Nadja B. ; Vestergaard, Henrik ; Hansen, Torben ; Bahl, Martin Iain ; Brix, Susanne ; Kristiansen, Karsten ; Licht, Tine Rask ; Lauritzen, Lotte ; Pedersen, Oluf ; Gupta, Ramneek
Presented at:
Manipulation of the Gut Microbiota for Metabolic Health (X3), Keystone symposia

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2018

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Integrative network analysis highlights biological processes underlying GLP-1 stimulated insulin secretion: A DIRECT study

Gudmundsdottir, Valborg ; Pedersen, Helle Krogh ; Allebrandt, Karla Viviani ; Brorsson, Caroline Anna ; van Leeuwen, Nienke ; Banasik, Karina ; Mahajan, Anubha ; Groves, Christopher J ; van de Bunt, Martijn ; Dawed, Adem Y ; Fritsche, Andreas ; Staiger, Harald ; Simonis-Bik, Annemarie M C ; Deelen, Joris ; Kramer, Mark H H ; Dietrich, Axel ; Hübschle, Thomas ; Willemsen, Gonneke ; Häring, Hans-Ulrich ; de Geus, Eco J C ; Boomsma, Dorret I ; Eekhoff, Elisabeth M W ; Ferrer, Jorge ; McCarthy, Mark I ; Pearson, Ewan R ; Gupta, Ramneek ; Brunak, Søren ; 't Hart, Leen M
in: P L o S One, vol: 13, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1371/journal.pone.0189886