Morten Nielsen

Morten Nielsen

Gruppeleder, Professor

DTU SUNDHEDSTEKNOLOGI
Institut for Sundhedsteknologi

Danmarks Tekniske Universitet

Kemitorvet

Bygning 204, rum 247

2800 Kgs. Lyngby

Tlf.
Tlf.
Fax 45 93 15 85
E-mail morni@dtu.dk
ORCID 0000-0001-7885-4311
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2020
 

Immunoinformatics: Predicting Peptide–MHC Binding

Nielsen, Morten ; Andreatta, Massimo ; Peters, Bjoern ; Buus, Søren
in: Annual Review of Biomedical Data Science, vol: 3, issue: 1, pages: 191-215

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2020     |    DOI: https://doi.org/10.1146/annurev-biodatasci-021920-100259

  PDF

Immunopeptidomic Data Integration to Artificial Neural Networks Enhances Protein-Drug Immunogenicity Prediction

Barra, Carolina ; Ackaert, Chloe ; Reynisson, Birkir ; Schockaert, Jana ; Jessen, Leon Eyrich ; Watson, Mark ; Jang, Anne ; Comtois-Marotte, Simon ; Goulet, Jean-Philippe ; Pattijn, Sofie ; Paramithiotis, Eustache ; Nielsen, Morten
in: Frontiers in Immunology, vol: 11

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2020     |    DOI: https://doi.org/10.3389/fimmu.2020.01304

 

Improved prediction of HLA antigen presentation hotspots: applications for immunogenicity risk assessment of therapeutic proteins

Attermann, Anders Steenholdt ; Barra, Carolina ; Reynisson, Birkir ; Schultz, Heidi Schiøler ; Leurs, Ulrike ; Lamberth, Kasper ; Nielsen, Morten
in: Immunology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2020     |    DOI: https://doi.org/10.1111/imm.13274

 

In silico guided discovery of novel class i and ii trypanosoma cruzi epitopes recognized by T cells from chagas' disease patients

Acevedo, Gonzalo R. ; Juiz, Natalia A. ; Ziblat, Andrea ; Perri, Lucas Perez ; Girard, Magali C. ; Ossowski, Micaela S. ; Fernandez, Marisa ; Hernandez, Yolanda ; Chadi, Raul ; Wittig, Michael ; Franke, Andre ; Nielsen, Morten ; Gomez, Karina A.
in: Journal of Immunology, vol: 204, issue: 6, pages: 1571-1581

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2020     |    DOI: https://doi.org/10.4049/jimmunol.1900873

 

T Cell Epitope Predictions

Peters, Bjoern ; Nielsen, Morten ; Sette, Alessandro
in: Annual Review of Immunology, vol: 38, issue: 1, pages: 123-145

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2020     |    DOI: https://doi.org/10.1146/annurev-immunol-082119-124838

 

The Immune Epitope Database and Analysis Resource Program 2003–2018: reflections and outlook

Martini, Sheridan ; Nielsen, Morten ; Peters, Bjoern ; Sette, Alessandro
in: Immunogenetics, vol: 72, pages: 57-76

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2020     |    DOI: https://doi.org/10.1007/s00251-019-01137-6

2019
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A generic deep convolutional neural network framework for prediction of receptor–ligand interactions—NetPhosPan: application to kinase phosphorylation prediction

Fenoy, Emilio ; Gonzalez-Izarzugaza, Jose Maria ; Jurtz, Vanessa ; Brunak, Søren ; Nielsen, Morten
in: Bioinformatics, vol: 35, issue: 7, pages: 1098-1107

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1093/bioinformatics/bty715

  PDF

Antibody Specific B-Cell Epitope Predictions: Leveraging Information From Antibody-Antigen Protein Complexes

Jespersen, Martin Closter ; Mahajan, Swapnil ; Peters, Bjoern ; Nielsen, Morten ; Marcatili, Paolo
in: Frontiers in Immunology, vol: 10

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.3389/fimmu.2019.00298

  PDF

Benchmark datasets of immune receptor-epitope structural complexes

Mahajan, Swapnil ; Yan, Zhen ; Jespersen, Martin Closter ; Jensen, Kamilla Kjærgaard ; Marcatili, Paolo ; Nielsen, Morten ; Sette, Alessandro ; Peters, Bjoern
in: BMC Bioinformatics, vol: 20, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1186/s12859-019-3109-6

  PDF

Characterization of Antigenic MHC-Class-I-Restricted T Cell Epitopes in the Glycoprotein of Ebolavirus

Powlson, Jonathan ; Wright, Daniel ; Zeltina, Antra ; Giza, Mark ; Nielsen, Morten ; Rampling, Tommy ; Venkatrakaman, Navin ; Bowden, Thomas A. ; Hill, Adrian V.S. ; Ewer, Katie J.
in: Cell Reports, vol: 29, issue: 9, pages: 2537-2545.e3

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1016/j.celrep.2019.10.105