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DTU Sundhedsteknologi

DTU Bioinformatik

Jose Maria Gonzalez-Izarzugaza

Gruppeleder, Lektor

Institut for Sundhedsteknologi

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 017

2800 Kgs. Lyngby

Tlf.	45 25 24 72
Tlf.	45 25 24 77
Fax	45 93 15 85
E-mail	jose.mg.izarzugaza@dtu.dk
ORCID	0000-0003-1754-5122

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ALLE Artikel i Journal (27) Afhandling (0) Bog (0) Konference (3) Rapport (0) MISC (0) PATENT (0) Peer reviewed (31)

2019

A generic deep convolutional neural network framework for prediction of receptor–ligand interactions—NetPhosPan: application to kinase phosphorylation prediction

Fenoy, Emilio ; Gonzalez-Izarzugaza, Jose Maria ; Jurtz, Vanessa ; Brunak, Søren ; Nielsen, Morten
in: Bioinformatics, vol: 35, issue: 7, pages: 1098-1107

Type: Journal article (Peer reviewed)

Status: Published | År: 2019 | DOI: https://doi.org/10.1093/bioinformatics/bty715

Conflicting associations between dietary patterns and changes of anthropometric traits across subgroups of middle-aged women and men

Jiang, Li ; Audouze, Karine ; Romero Herrera, Jose Alejandro ; Ängquist, Lars Henrik ; Kjærulff, Sonny Kim ; Izarzugaza, Jose M.G. ; Tjønneland, Anne ; Halkjær, Jytte ; Overvad, Kim ; Sørensen, Thorkild I.A. ; Brunak, Søren
in: Clinical Nutrition

Type: Journal article (Peer reviewed)

Status: Accepted/In press | År: 2019 | DOI: https://doi.org/10.1016/j.clnu.2019.02.003

Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries

Asplund, Maria ; Kjartansdóttir, Kristín Rós ; Mollerup, Sarah ; Vinner, Lasse ; Fridholm, Helena ; Herrera, José A. R. ; Friis-Nielsen, Jens ; Hansen, Thomas Arn ; Jensen, Randi Holm ; Nielsen, Ida Broman ; Richter, Stine Raith ; Rey-Iglesia, Alba ; Matey-Hernandez, Maria Luisa ; Alquezar-Planas, David E. ; Olsen, Pernille V. S. ; Sicheritz-Pontén, Thomas ; Willerslev, Eske ; Lund, Ole ; Brunak, Søren ; Mourier, Tobias ; Nielsen, Lars Peter ; Izarzugaza, Jose M. G. ; Hansen, Anders Johannes
in: Clinical Microbiology and Infection, vol: 25, issue: 10, pages: 1277-1285

Type: Journal article (Peer reviewed)

Status: Published | År: 2019 | DOI: https://doi.org/10.1016/j.cmi.2019.04.028

High-throughput sequencing-based investigation of viruses in human cancers by multi-enrichment approach

Mollerup, Sarah ; Asplund, Maria ; Friis-Nielsen, Jens ; Kjartansdóttir, Kristín Rós ; Fridholm, Helena ; Hansen, Thomas Arn ; Herrera, José Alejandro Romero ; Barnes, Christopher James ; Jensen, Randi Holm ; Richter, Stine Raith ; Nielsen, Ida Broman ; Pietroni, Carlotta ; Alquezar-Planas, David E. ; Rey-Iglesia, Alba ; Olsen, Pernille V. S. ; Rajpert-De Meyts, Ewa ; Groth-Pedersen, Line ; von Buchwald, Christian ; Jensen, David H. ; Gniadecki, Robert ; Høgdall, Estrid ; Langhoff, Jill Levin ; Pete, Imre ; Vereczkey, Ildikó ; Baranyai, Zsolt ; Dybkaer, Karen ; Johnsen, Hans Erik ; Steiniche, Torben ; Hokland, Peter ; Rosenberg, Jacob ; Baandrup, Ulrik ; Sicheritz-Pontén, Thomas ; Willerslev, Eske ; Brunak, Søren ; Lund, Ole ; Mourier, Tobias ; Vinner, Lasse ; Izarzugaza, Jose M. G. ; Nielsen, Lars Peter ; Hansen, Anders Johannes
in: Journal of Infectious Diseases, vol: 220, issue: 8, pages: 1312-1324

Type: Journal article (Peer reviewed)

Status: Published | År: 2019 | DOI: https://doi.org/10.1093/infdis/jiz318

Identification of hyper-rewired genomic stress non-oncogene addiction genes across 15 cancer types

Hjaltelin, Jessica Xin ; Izarzugaza, Jose M. G. ; Jensen, Lars Juhl ; Russo, Francesco ; Westergaard, David ; Brunak, Søren
in: n p j Systems Biology and Applications, vol: 5

Type: Journal article (Peer reviewed)

Status: Published | År: 2019 | DOI: https://doi.org/10.1038/s41540-019-0104-5

2018

Accurate genotyping across variant classes and lengths using variant graphs

Sibbesen, Jonas Andreas ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Dam-Als, Thomas ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben ; Friborg, Rune M. ; Halager, Anders Egerup ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick ; Ali , Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in: Nature Genetics

Type: Journal article (Peer reviewed)

Status: Published | År: 2018 | DOI: https://doi.org/10.1038/s41588-018-0145-5

Analysis of a gene panel for targeted sequencing of colorectal cancer samples

Jensen, Klaus Højgaard ; Izarzugaza, Jose M.G ; Sierakowska Juncker, Agnieszka ; Borup Hansen, Rasmus ; Frøstrup Hansen, Torben ; Timshel, Pascal ; Blondal, Thorarinn ; Jensen, Thomas Skøt ; Rygaard-Hjalsted, Eske ; Mouritzen, Peter ; Thorsen, Michael ; Wernersson, Rasmus ; Nielsen, Henrik Bjørn ; Jakobsen, Anders ; Brunak, Søren ; Brandt Sørensen, Flemming
in: OncoTarget, vol: 9, issue: 10, pages: 9043-9060

Type: Journal article (Peer reviewed)

Status: Published | År: 2018 | DOI: https://doi.org/10.18632/oncotarget.24138

A Novel Familial Cardiac Arrhythmia Syndrome with Widespread ST-Segment Depression

Bundgaard, Henning ; Jøns, Christian ; Lodder, Elisabeth ; Gonzalez-Izarzugaza, Jose Maria ; Herrera, Jose A. Romero ; Pehrson, Steen ; Tfelt-Hansen, Jacob ; Ahlberg, Gustav ; Olesen, Morten S ; Holst, Anders G ; Wellens, Hein ; de Villiers, Carin ; Hastings, Robert ; Graham, Stuart ; Wilde, Arthur A. M. ; Watkins, Hugh ; Christensen, Alex ; Brunak, Søren
in: The New England Journal of Medicine, vol: 379, pages: 1780-1782

Type: Comment/debate (Peer reviewed)

Status: Published | År: 2018 | DOI: https://doi.org/10.1056/NEJMc1807668

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

Matey-Hernandez, María Luisa ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Andreas Sibbesen, Jonas ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; Beusekom, Johan v. ; Espeseth, Thomas ; Flindt, Esben N. ; Friborg, Rune M. ; Halager, Anders Egerup ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Ali , Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide ; Izarzugaza, Jose M. G.
in: B M C Bioinformatics, vol: 19

Type: Journal article (Peer reviewed)

Status: Published | År: 2018 | DOI: https://doi.org/10.1186/s12859-018-2239-6

Human MHC-II with Shared Epitope Motifs Are Optimal Epstein-Barr Virus Glycoprotein 42 Ligands—Relation to Rheumatoid Arthritis

Trier, Nicole ; Gonzalez-Izarzugaza, Jose Maria ; Chailyan, Anna ; Marcatili, Paolo ; Houen, Gunnar
in: International Journal of Molecular Sciences (Online), vol: 19, issue: 1

Type: Journal article (Peer reviewed)

Status: Published | År: 2018 | DOI: https://doi.org/10.3390/ijms19010317

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