Thomas Nordahl Petersen

Thomas Nordahl Petersen

Associate Professor

DTU BIOINFORMATICS
Department of Bio and Health Informatics

Metagenomics
DTU Bioinformatics Employees

Technical University of Denmark

Kemitorvet

Building 208, room 021

2800 Kgs. Lyngby

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2017
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MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Petersen, Thomas Nordahl ; Lukjancenko, Oksana ; Thomsen, Martin Christen Frølund ; Sperotto, Maria Maddalena ; Lund, Ole ; Aarestrup, Frank Møller ; Sicheritz-Pontén, Thomas
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0176469), vol: 12, issue: 5, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0176469

 

The CGE Tool Box

Larsen, Mette Voldby ; Joensen, Katrine Grimstrup ; Zankari, Ea ; Ahrenfeldt, Johanne ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Roer, Louise ; Leekitcharoenphon, Pimlapas ; Saputra, Dhany ; Cosentino, S. ; Thomsen, Martin Christen Frølund ; Bellod Cisneros, Jose Luis ; Jurtz, Vanessa Isabell ; Rasmussen, Simon ; Petersen, Thomas Nordahl ; Hasman, Henrik ; Sicheritz-Pontén, Thomas ; Aarestrup, Frank Møller ; Lund, Ole
part of: Applied Genomics of Foodborne Pathogens, pages: 65-90, 2017, Springer, Switzerland

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/978-3-319-43751-4_5

 

Protein features as determinants of wild-type glycoside hydrolase thermostability

Geertz-Hansen, Henrik Marcus ; Kiemer, Lars ; Nielsen, Morten ; Stanchev, Kiril ; Blom, Nikolaj ; Brunak, Søren ; Petersen, Thomas Nordahl
in journal: Proteins (ISSN: 0887-3585) (DOI: http://dx.doi.org/10.1002/prot.25357), vol: 85, issue: 11, pages: 2036-2044, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1002/prot.25357

2015
2014
 

Compass: A hybrid method for clinical and biobank data mining

Krysiak-Baltyn, Konrad ; Petersen, Thomas Nordahl ; Audouze, Karine Marie Laure ; Jørgensen, Niels ; Ängquist, L. ; Brunak, Søren
in journal: Journal of Biomedical Informatics (ISSN: 1532-0464) (DOI: http://dx.doi.org/10.1016/j.jbi.2013.10.007), vol: 47, pages: 160-170, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2014     |    DOI: http://dx.doi.org/10.1016/j.jbi.2013.10.007

 

Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds

Geertz-Hansen, Henrik Marcus ; Sorgenfrei Blom, Nikolaj ; Feist, Adam ; Brunak, Søren ; Petersen, Thomas Nordahl
in journal: Proteins (ISSN: 0887-3585) (DOI: http://dx.doi.org/10.1002/prot.24536), vol: 82, issue: 9, pages: 1819-1828, 2014

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2014     |    DOI: http://dx.doi.org/10.1002/prot.24536

 

Prediction of Wild-type Enzyme Characteristics

Geertz-Hansen, Henrik Marcus ; Sorgenfrei Blom, Nikolaj (Supervisor) ; Kiemer, Lars (Supervisor) ; Petersen, Thomas Nordahl (Main supervisor)
Technical University of Denmark (DTU), pages: 199

Type: Ph.D. thesis

Status: Published     |    Year: 2014

2013
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Prediction of Disease Causing Non-Synonymous SNPs by the Artificial Neural Network Predictor NetDiseaseSNP.

Johansen, Morten Bo ; Gonzalez-Izarzugaza, Jose Maria ; Brunak, Søren ; Petersen, Thomas Nordahl ; Gupta, Ramneek
in journal: PloS one. (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0068370), vol: 8, issue: 7, 2013

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2013     |    DOI: http://dx.doi.org/10.1371/journal.pone.0068370

2011
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Prediction of protein structural features by use of artificial neural networks

Petersen, Bent ; Lundegaard, Claus (Supervisor) ; Petersen, Thomas Nordahl (Supervisor)
Technical University of Denmark (DTU), pages: 122

Type: Ph.D. thesis

Status: Published     |    Year: 2011

 

SignalP 4.0: discriminating signal peptides from transmembrane regions

Petersen, Thomas Nordahl ; Brunak, Søren ; von Heijne, Gunnar ; Nielsen, Henrik
in journal: Nature Methods (ISSN: 1548-7091) (DOI: http://dx.doi.org/10.1038/nmeth.1701), vol: 8, issue: 10, pages: 785-786, 2011

Type: Letter (Peer reviewed)

Status: Published     |    Year: 2011     |    DOI: http://dx.doi.org/10.1038/nmeth.1701