Marcin Krzystanek

Marcin Krzystanek

Postdoc

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Cancer Genomics
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 010

2800 Kgs. Lyngby

Tlf.
Tlf.
Fax 45 93 15 85
E-mail marcin@cbs.dtu.dk
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Publikationer
Projekter
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2017
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Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut

Pipek, Orsolya ; Ribli, Dezső ; Molnar, Janos ; Poti, Adam ; Krzystanek, Marcin ; Bodor, András ; Tusnady, Gabor E. ; Szallasi, Zoltan Imre ; Csabai, Istvan ; Szüts, D.
in journal: B M C Bioinformatics (ISSN: 1471-2105) (DOI: http://dx.doi.org/10.1186/s12859-017-1492-4), vol: 18, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1186/s12859-017-1492-4

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Loss of BRCA1 or BRCA2 markedly increases the rate of base substitution mutagenesis and has distinct effects on genomic deletions

Zamborszky, J. ; Szikriszt, B. ; Gervai, J. Z. ; Pipek, O. ; Poti, A. ; Krzystanek, Marcin ; Ribli, D. ; Szalai-Gindl, J. M. ; Csabai, I. ; Szallasi, Zoltan Imre ; Swanton, C. ; Richardson, A L ; Szuets, D.
in journal: Oncogene (ISSN: 0950-9232) (DOI: http://dx.doi.org/10.1038/onc.2016.243), vol: 36, issue: 6, pages: 746-755, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1038/onc.2016.243

2016
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A robust prognostic gene expression signature for early stage lung adenocarcinoma

Krzystanek, Marcin ; Moldvay, Judit ; Szüts, David ; Szallasi, Zoltan Imre ; Eklund, Aron Charles
in journal: Biomarker Research (ISSN: 2050-7771) (DOI: http://dx.doi.org/10.1186/s40364-016-0058-3), vol: 4, issue: 4, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1186/s40364-016-0058-3

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A comprehensive survey of the mutagenic impact of common cancer cytotoxics

Szikriszt, Bernadett ; Poti, Adam ; Pipek, Orsolya ; Krzystanek, Marcin ; Kanu, Nnennaya ; Molnar, Janos ; Ribli, Dezso ; Szeltner, Zoltan ; Tusnady, Gabor E. ; Csabai, Istvan ; Szallasi, Zoltan Imre ; Swanton, Charles ; Szuts, David
in journal: Genome Biology (ISSN: 1474-760X) (DOI: http://dx.doi.org/10.1186/s13059-016-0963-7), vol: 17, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1186/s13059-016-0963-7

2015
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Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data

Favero, Francesco ; Joshi, Tejal ; Marquard, Andrea Marion ; Birkbak, Nicolai Juul ; Krzystanek, Marcin ; Li, Qiyuan ; Szallasi, Zoltan Imre ; Eklund, Aron Charles
in journal: Annals of Oncology (ISSN: 0923-7534), vol: 26, issue: 1, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015

 

Relationship of postoperative thrombocytosis and survival of patients with colorectal cancer

Josa, Valeria ; Krzystanek, Marcin ; Eklund, Aron Charles ; Salamon, Ferenc ; Zarand, Attila ; Szallasi, Zoltan Imre ; Baranyai, Zsolt
in journal: International Journal of Surgery (ISSN: 1743-9191) (DOI: http://dx.doi.org/10.1016/j.ijsu.2015.03.005), vol: 18, pages: 1-6, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: http://dx.doi.org/10.1016/j.ijsu.2015.03.005

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Somatic Cell Fusions Reveal Extensive Heterogeneity in Basal-like Breast Cancer

Su, Ying ; Subedee, Ashim ; Bloushtain-Qimron, Noga ; Savova, Virginia ; Krzystanek, Marcin ; Li, Lewyn ; Marusyk, Andriy ; Tabassum, Doris P. ; Zak, Alexander ; Szallasi, Zoltan Imre
in journal: Cell Reports (DOI: http://dx.doi.org/10.1016/j.celrep.2015.05.011), vol: 11, issue: 10, pages: 1549-1563, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: http://dx.doi.org/10.1016/j.celrep.2015.05.011

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Pan-cancer analysis of genomic scar signatures associated with homologous recombination deficiency suggests novel indications for existing cancer drugs

Marquard, Andrea Marion ; Eklund, Aron Charles ; Joshi, Tejal ; Krzystanek, Marcin ; Favero, Francesco ; Wang, Zhigang C ; Richardson, Andrea L ; Silver, Daniel P ; Szallasi, Zoltan Imre ; Birkbak, Nicolai Juul
in journal: Biomarker Research (DOI: http://dx.doi.org/10.1186/s40364-015-0033-4), vol: 3, issue: 9, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: http://dx.doi.org/10.1186/s40364-015-0033-4

 

Thrombocytosis of Liver Metastasis from Colorectal Cancer as Predictive Factor

Josa, Valeria ; Krzystanek, Marcin ; Vass, Tamas ; Lang, Tamas ; Juhasz, Viktoria ; Szilagyi, Kamilla ; Tihanyi, Balazs ; Harsanyi, Laszlo ; Szallasi, Zoltan Imre ; Salamon, Ferenc ; Baranyai, Zsolt
in journal: Pathology and Oncology Research (ISSN: 1219-4956) (DOI: http://dx.doi.org/10.1007/s12253-015-9925-8), vol: 21, issue: 4, pages: 991-997, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: http://dx.doi.org/10.1007/s12253-015-9925-8

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TumorTracer: a method to identify the tissue of origin from the somatic mutations of a tumor specimen

Marquard, Andrea Marion ; Birkbak, Nicolai Juul ; Thomas, Cecilia Engel ; Favero, Francesco ; Krzystanek, Marcin ; Lefebvre, Celine ; Ferté, Charles ; Jamal-Hanjani, Mariam ; Wilson, Gareth A. ; Shafi, Seema ; Swanton, Charles ; André, Fabrice ; Szallasi, Zoltan Imre ; Eklund, Aron Charles
in journal: BMC Medical Genomics (ISSN: 1755-8794) (DOI: http://dx.doi.org/10.1186/s12920-015-0130-0), vol: 8, issue: 58, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: http://dx.doi.org/10.1186/s12920-015-0130-0