Paolo Marcatili

Paolo Marcatili

Lektor

DTU BIOINFORMATIK
Institut for Bio- og Sundhedsinformatik

Immunoinformatics and Machine Learning
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum 012

2800 Kgs. Lyngby

Tlf.
Mobil
Fax 45 93 15 85
E-mail pamar@bioinformatics.dtu.dk
Hjemmeside

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Publikationer
Projekter
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2017
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ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping

Hansen, Christian Skjødt ; Østerbye, Thomas ; Marcatili, Paolo ; Lund, Ole ; Buus, Søren ; Nielsen, Morten
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0168453), vol: 12, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0168453

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Positive diversifying selection is a pervasive adaptive force throughout the Drosophila radiation

Cicconardi, Francesco ; Marcatili, Paolo ; Arthofer, Wolfgang ; Schlick-Steiner, Birgit C ; Steiner, Florian M
in journal: Molecular Phylogenetics and Evolution (ISSN: 1055-7903) (DOI: http://dx.doi.org/10.1016/j.ympev.2017.04.023), vol: 112, pages: 230-243, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1016/j.ympev.2017.04.023

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BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

Jespersen, Martin Closter ; Peters, Bjoern ; Nielsen, Morten ; Marcatili, Paolo
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkx346), vol: 45, issue: W1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkx346

 

3D protein-structure-oriented discovery of clinical relation across chronic lymphocytic leukemia patients

Mochament, Konstantinos ; Agathangelidis, Andreas ; Polychronidou, Eleftheria ; Palaskas, Christos ; Kalamaras, Elias ; Moschonas, Panagiotis ; Stamatopoulos, Kostas ; Chailyan, Anna ; Overby, Nanna ; Marcatili, Paolo ; Hadzidimitriou, Anastasia ; Tzovaras, Dimitrios
in journal: Lecture Notes in Computer Science (ISSN: 0302-9743) (DOI: http://dx.doi.org/10.1007/978-3-319-56154-7_14), vol: 10209, pages: 139-150, 2017
Presented at:
5th International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2017, Granada, Spain, April 26–28, 2017, 2017, Granada

Type: Conference article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.1007/978-3-319-56154-7_14

 

NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data

Jurtz, Vanessa Isabell ; Paul, Sinu ; Andreatta, Massimo ; Marcatili, Paolo ; Peters, Bjoern ; Nielsen, Morten
in journal: Journal of Immunology (ISSN: 0022-1767) (DOI: http://dx.doi.org/10.4049/jimmunol.1700893), vol: 199, issue: 8, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: http://dx.doi.org/10.4049/jimmunol.1700893

2016
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Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity

Asti, Lorenzo ; Uguzzoni, Guido ; Marcatili, Paolo ; Pagnani, Andrea
in journal: P L o S Computational Biology (Online) (ISSN: 1553-7358) (DOI: http://dx.doi.org/10.1371/journal.pcbi.1004870), vol: 12, issue: 4, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1371/journal.pcbi.1004870

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A novel approach to probe host-pathogen interactions of bovine digital dermatitis, a model of a complex polymicrobial infection

Marcatili, Paolo ; Weiss Nielsen , Martin ; Sicheritz-Pontén, Thomas ; Jensen, Tim Kåre ; Schafer-Nielsen, Claus ; Boye, Mette ; Nielsen, Morten ; Schou, Kirstine Klitgaard
in journal: BMC Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/s12864-016-3341-7), vol: 17, issue: 1, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: http://dx.doi.org/10.1186/s12864-016-3341-7

 

Automated Clustering Analysis of Immunoglobulin Sequences in Chronic Lymphocytic Leukemia Based on 3D Structural Descriptors

Marcatili, Paolo ; Mochament, Konstantinos ; Agathangelidis, Andreas ; Moschonas, Panagiotis ; Sutton, Lesley-Ann ; Yan, Xiao-Jie ; Bikos, Vasilis ; Vardi, Anna ; Chailyan, Anna ; Stavroyianni, Niki ; Jensen, Kamilla Kjærgaard ; Anagnostopoulos, Achilles ; Chiorazzi, Nicholas ; Belessi, Chrysoula ; Rosenquist, Richard ; Ghia, Paolo ; Stamatopoulos, Kostas ; Hadzidimitriou, Anastasia ; Tzovaras, Dimitrios
in journal: Blood (ISSN: 0006-4971), vol: 128, issue: 22, pages: 4365, 2016

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016

 

Identification of common bacterial antigenic markers from bovine digital dermatitis lesions using meta-transcriptomics in combination with high-density peptide-microarrays

Weiss Nielsen , Martin ; Marcatili, Paolo ; Sicheritz-Pontén, Thomas ; Jensen, Tim Kåre ; Schafer-Nielsen, Claus ; Boye, M. ; Nielsen, M. ; Schou, Kirstine Klitgaard
Presented at:
2nd International Symposium Alternatives to Antibiotics , 2016, Paris

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2016

2015
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Tabhu: tools for antibody humanization.

Olimpieri, Pier Paolo ; Marcatili, Paolo ; Tramontano, Anna
in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/btu667), vol: 31, issue: 3, pages: 434-435, 2015

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: http://dx.doi.org/10.1093/bioinformatics/btu667