DTU Sundhedsteknologi
DTU Bioinformatik
Rosa Lundbye Allesøe

Rosa Lundbye Allesøe

Studentermedhjælper

Institut for Bio- og Sundhedsinformatik

Genomic Epidemiology
DTU Bioinformatics Employees

Danmarks Tekniske Universitet

Kemitorvet

Bygning 208, rum N/A

2800 Kgs. Lyngby

Tlf.
Fax 45 93 15 85
E-mail rosa@bioinformatics.dtu.dk
Hjemmeside

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Publikationer
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2018
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Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots

Nag, Sidsel ; Kofoed, Poul Erik ; Ursing, Johan ; Lemvigh, Camilla Koldbæk ; Allesøe, Rosa Lundbye ; Rodrigues, Amabelia ; Svendsen, Christina Aaby ; Jensen, Jacob Dyring ; Alifrangis, Michael ; Lund, Ole ; Møller Aarestrup, Frank
in: Malaria Journal, vol: 17, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1186/s12936-018-2232-6

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CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli based on the fumC and fimH Alleles

Roer, Louise ; Johannesen, Thor Bech ; Hansen, Frank ; Stegger, Marc ; Tchesnokova, Veronika ; Sokurenko, Evgeni ; Garibay, Natasha ; Allesøe, Rosa Lundbye ; Thomsen, Martin C. F. ; Lund, Ole ; Hasman, Henrik ; Hammerum, Anette M.
in: Journal of Clinical Microbiology, vol: 56, issue: 4

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1128/JCM.00063-18

 

Neoantigen vaccine generates intratumoral T cell responses in phase Ib glioblastoma trial

Keskin, Derin B. ; Anandappa, Annabelle J. ; Sun, Jing ; Tirosh, Itay ; Mathewson, Nathan D. ; Li, Shuqiang ; Oliveira, Giacomo ; Giobbie-Hurder, Anita ; Felt, Kristen ; Gjini, Evisa ; Shukla, Sachet A. ; Hu, Zhuting ; Li, Letitia ; Le, Phuong M. ; Allesøe, Rosa Lundbye ; Richman, Alyssa R. ; Kowalczyk, Monika S ; Abdelrahman, Sara ; Geduldig, Jack E. ; Charbonneau, Sarah ; Pelton, Kristine ; Iorgulescu, J. Bryan ; Elagina, Liudmila ; Zhang, Wandi ; Olive, Oriol ; McCluskey, Christine ; Olsen, Lars Rønn ; Stevens, Jonathan ; Lane, William J. ; Salazar, Andres M. ; Daley, Heather ; Wen, Patrick Y. ; Chiocca, E. Antonio ; Harden, Maegan ; Lennon, Niall J. ; Gabriel, Stacey ; Getz, Gad ; Lander, Eric S. ; Regev, Aviv ; Ritz, Jerome ; Neuberg, Donna ; Rodig, Scott J. ; Ligon, Keith L. ; Suvà, Mario L. ; Wucherpfennig, Kai W. ; Hacohen, Nir ; Fritsch, Edward F. ; Livak, Kenneth J ; Ott, Patrick A ; Wu, Catherine J ; Reardon, David A.
in: Nature, vol: 565, pages: 234-239

Type: Letter (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1038/s41586-018-0792-9

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SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data

Kaya, Hülya ; Hasman, Henrik ; Larsen, Jesper ; Stegger, Marc ; Johannesen, Thor Bech ; Allesøe, Rosa Lundbye ; Lemvigh, Camilla Koldbæk ; Aarestrup, Frank Møller ; Lund, Ole ; Larsen, Anders Rhod
in: mSphere, vol: 3, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1128/mSphere.00612-17

2017
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Development of a web tool for Escherichia coli subtyping based on fimH alleles

Roer, Louise ; Tchesnokova, Veronika ; Allesøe, Rosa Lundbye ; Muradova, Mariya ; Chattopadhyay, Sujay ; Ahrenfeldt, Johanne ; Thomsen, Martin Christen Frølund ; Lund, Ole ; Hansen, Frank ; Hammerum, Anette Marie ; Sokurenko, Evgeni ; Hasman, Henrik
in: Journal of Clinical Microbiology, vol: 55, issue: 8, pages: 2538-2543

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1128/JCM.00737-17

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PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens

Zankari, Ea ; Allesøe, Rosa Lundbye ; Joensen, Katrine Grimstrup ; Cavaco, Lina ; Lund, Ole ; Aarestrup, Frank Møller
in: Journal of Antimicrobial Chemotherapy, vol: 72, issue: 10, pages: 2764-2768

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1093/jac/dkx217