DTU Sundhedsteknologi
DTU Bioinformatik
Paolo Marcatili

Paolo Marcatili

Groupleader, Associate Professor

Department of Health Technology

Technical University of Denmark


Building 208, room 012

2800 Kgs. Lyngby

Fax +4545 93 15 85
E-mail pamar@dtu.dk
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Antibody Specific B-Cell Epitope Predictions: Leveraging Information From Antibody-Antigen Protein Complexes

Jespersen, Martin Closter ; Mahajan, Swapnil ; Peters, Bjoern ; Nielsen, Morten ; Marcatili, Paolo
in: Frontiers in Immunology, vol: 10

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.3389/fimmu.2019.00298


Immunoglobulin G structure and rheumatoid factor epitopes

Maibom-Thomsen, Sheila Lefoli ; Trier, Nicole Hartwig ; Holm, Bettina Eide ; Hansen, Kirsten Beth ; Rasmussen, Morten Ib ; Chailyan, Anna ; Marcatili, Paolo ; Højrup, Peter ; Houen, Gunnar
in: PLOS ONE, vol: 14, issue: 6

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1371/journal.pone.0217624


NetSurfP-2.0: Improved prediction of protein structural features by integrated deep learning

Klausen, Michael Schantz ; Jespersen, Martin Closter ; Nielsen, Henrik ; Jensen, Kamilla Kjærgaard ; Jurtz, Vanessa Isabell ; Sønderby, Casper Kaae ; Sommer, Morten Otto Alexander ; Winther, Ole ; Nielsen, Morten ; Petersen, Bent ; Marcatili, Paolo
in: Proteins: Structure, Function, and Bioinformatics, vol: 87, issue: 6, pages: 520-527

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1002/prot.25674


The ABCD database: a repository for chemically defined antibodies

Lima, Wanessa C. ; Gasteiger, Elisabeth ; Marcatili, Paolo ; Duek, Paula ; Bairoch, Amos ; Cosson, Pierre
in: Nucleic acids research

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2019     |    DOI: https://doi.org/10.1093/nar/gkz714


AnOxPe-pred: Using deep learning for the prediction of antioxidative properties of peptides.

Olsen, Tobias Hegelund ; Pertseva, Margarita ; García Moreno, Pedro Jesús ; Jacobsen, Charlotte ; Lund, Ole ; Hansen, Egon Bech ; Marcatili, Paolo
part of: Sustain Conference 2018, 2018, Technical University of Denmark, Lyngby, Denmark
Presented at:
Sustain conference 2018: Creating Technology for a Sustainable Society

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    Year: 2018


Automated shape-based clustering of 3D immunoglobulin protein structures in chronic lymphocytic leukemia

Polychronidou, Eleftheria ; Kalamaras, Ilias ; Agathangelidis, Andreas ; Sutton, Lesley Ann ; Yan, Xiao Jie ; Bikos, Vasilis ; Vardi, Anna ; Mochament, Konstantinos ; Chiorazzi, Nicholas ; Belessi, Chrysoula ; Rosenquist, Richard ; Ghia, Paolo ; Stamatopoulos, Kostas ; Vlamos, Panayiotis ; Chailyan, Anna ; Overby, Nanna ; Marcatili, Paolo ; Hatzidimitriou, Anastasia ; Tzovaras, Dimitrios
in: BMC Bioinformatics, vol: 19, issue: Suppl. 14
Presented at:
5th International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2017, Granada, Spain, April 26–28, 2017

Type: Conference article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1186/s12859-018-2381-1


Emulsifying properties of potato peptides

García-Moreno, Pedro J. ; Atak, Merve ; Marcatili, Paolo ; Jacobsen, Charlotte ; Hansen, Egon B.
Presented at:
17th Food Colloids Conference : Application of Soft Matter Concepts

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    Year: 2018


Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database

Mahajan, Swapnil ; Vita, Randi ; Shackelford, Deborah ; Lane, Jerome ; Schulten, Veronique ; Zarebski, Laura ; Jespersen, Martin Closter ; Marcatili, Paolo ; Nielsen, Morten ; Sette, Alessandro ; Peters, Bjoern
in: Frontiers in Immunology, vol: 9

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.3389/fimmu.2018.02688


Human MHC-II with Shared Epitope Motifs Are Optimal Epstein-Barr Virus Glycoprotein 42 Ligands—Relation to Rheumatoid Arthritis

Trier, Nicole ; Gonzalez-Izarzugaza, Jose Maria ; Chailyan, Anna ; Marcatili, Paolo ; Houen, Gunnar
in: International Journal of Molecular Sciences (Online), vol: 19, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.3390/ijms19010317


Identification of the cognate peptide-MHC target of T cell receptors using molecular modeling and force field scoring

Lanzarotti, Esteban ; Marcatili, Paolo ; Nielsen, Morten
in: Molecular Immunology, vol: 94, pages: 91-97

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.molimm.2017.12.019