DTU Fødevareinstituttet
DTU Bioinformatik
Martin Christen Frølund Thomsen

Martin Christen Frølund Thomsen

Postdoc

National Food Institute, Technical University of Denmark

Research Group for Genomic Epidemiology

Technical University of Denmark

Kemitorvet

Building 204, room 104

2800 Kgs. Lyngby

Home page

Request a vCard via e-mail.

Publications
Projects
Loading

Publications rss feed

2018
 

CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli based on the fumC and fimH Alleles

Roer, Louise ; Johannesen, Thor Bech ; Hansen, Frank ; Stegger, Marc ; Tchesnokova, Veronika ; Sokurenko, Evgeni ; Garibay, Natasha ; Allesøe, Rosa Lundbye ; Thomsen, Martin Christen Frølund ; Lund, Ole ; Hasman, Henrik ; Hammerum, Anette M.
in: Journal of Clinical Microbiology (ISSN: 0095-1137), 2018

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: http://dx.doi.org/10.1128/JCM.00063-18

2017
 

WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark

Roer, Louise ; Hansen, Frank ; Thomsen, Martin Christen Frølund ; Knudsen, Jenny Dahl ; Hansen, Dennis Schrøder ; Wang, Mikala ; Samulioniené, Jurgita ; Justesen, Ulrik Stenz ; Røder, Bent L ; Schumacher, Helga ; Østergaard, Claus ; Andersen, Leif Percival ; Dzajic, Esad ; Søndergaard, Turid Snekloth ; Stegger, Marc ; Hammerum, Anette Marie ; Hasman, Henrik
in: Journal of Antimicrobial Chemotherapy (ISSN: 0305-7453), vol: 72, pages: 1922-1929, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/jac/dkx092

 

Development of a web tool for Escherichia coli subtyping based on fimH alleles

Roer, Louise ; Tchesnokova, Veronika ; Allesøe, Rosa Lundbye ; Muradova, Mariya ; Chattopadhyay, Sujay ; Ahrenfeldt, Johanne ; Thomsen, Martin Christen Frølund ; Lund, Ole ; Hansen, Frank ; Hammerum, Anette Marie ; Sokurenko, Evgeni ; Hasman, Henrik
in: Journal of Clinical Microbiology (ISSN: 0095-1137), vol: 55, issue: 8, pages: 2538-2543, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1128/JCM.00737-17

 

The CGE Tool Box

Larsen, Mette Voldby ; Joensen, Katrine Grimstrup ; Zankari, Ea ; Ahrenfeldt, Johanne ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Roer, Louise ; Leekitcharoenphon, Pimlapas ; Saputra, Dhany ; Cosentino, S. ; Thomsen, Martin Christen Frølund ; Bellod Cisneros, Jose Luis ; Jurtz, Vanessa Isabell ; Rasmussen, Simon ; Petersen, Thomas Nordahl ; Hasman, Henrik ; Sicheritz-Pontén, Thomas ; Aarestrup, Frank Møller ; Lund, Ole
part of: Applied Genomics of Foodborne Pathogens, pages: 65-90, 2017, Springer, Switzerland

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/978-3-319-43751-4_5

  PDF

RUCS: Rapid identification of PCR primers for unique core sequences

Thomsen, Martin Christen Frølund ; Hasman, Henrik ; Westh, Henrik ; Kaya, Hülya ; Lund, Ole
in: Bioinformatics (ISSN: 1367-4803), vol: 33, issue: 24, pages: 3917-3921, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/bioinformatics/btx526

2016
2015
  PDF

Genomic Epidemiology

Lund, Ole ; Thomsen, Martin Christen Frølund ; Bellod Cisneros, Jose Luis ; Ahrenfeldt, Johanne ; Tetzschner, Anna Maria Malberg ; Leekitcharoenphon, Pimlapas ; Kaas, Rolf Sommer ; Lukjancenko, Oksana ; Aarestrup, Frank Møller
part of: Book of Abstracts. DTU's Sustain Conference 2015, 2015, Technical University of Denmark (DTU), Lyngby
Presented at:
DTU Sustain Conference 2015, 2015, Lyngby

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    Year: 2015

2013
 

MHCcluster, a method for functional clustering of MHC molecules

Thomsen, Martin Christen Frølund ; Lundegaard, Claus ; Buus, Søren ; Lund, Ole ; Nielsen, Morten
in: Immunogenetics (ISSN: 0093-7711), vol: 65, issue: 9, pages: 655-665, 2013

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2013     |    DOI: http://dx.doi.org/10.1007/s00251-013-0714-9

2012
  PDF