DTU Sundhedsteknologi
DTU Bioinformatik
Kamilla Kjærgaard Munk

Kamilla Kjærgaard Munk

Postdoc

Department of Health Technology

Technical University of Denmark

Kemitorvet

Building 204, room 151

2800 Kgs. Lyngby

Fax +4545 93 15 85
E-mail kamkj@dtu.dk
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2019
 

NetSurfP-2.0: Improved prediction of protein structural features by integrated deep learning

Klausen, Michael Schantz ; Jespersen, Martin Closter ; Nielsen, Henrik ; Jensen, Kamilla Kjærgaard ; Jurtz, Vanessa Isabell ; Sønderby, Casper Kaae ; Sommer, Morten Otto Alexander ; Winther, Ole ; Nielsen, Morten ; Petersen, Bent ; Marcatili, Paolo
in: Proteins: Structure, Function, and Bioinformatics, vol: 87, issue: 6, pages: 520-527

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1002/prot.25674

2018
 

Erratum to: Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis (Nature Genetics, (2018), 50, 8, (1072-1080), 10.1038/s41588-018-0157-1)

Waage, Johannes ; Standl, Marie ; Curtin, John A. ; Jessen, Leon E. ; Thorsen, Jonathan ; Tian, Chao ; Schoettler, Nathan ; Flores, Carlos ; Abdellaoui, Abdel ; Ahluwalia, Tarunveer S. ; Alves, Alexessander C. ; Amaral, Andre F.S. ; Antó, Josep M. ; Arnold, Andreas ; Barreto-Luis, Amalia ; Baurecht, Hansjörg ; van Beijsterveldt, Catharina E.M. ; Bleecker, Eugene R. ; Bonàs-Guarch, Sílvia ; Boomsma, Dorret I. ; Brix, Susanne ; Bunyavanich, Supinda ; Burchard, Esteban G. ; Chen, Zhanghua ; Curjuric, Ivan ; Custovic, Adnan ; den Dekker, Herman T. ; Dharmage, Shyamali C. ; Dmitrieva, Julia ; Duijts, Liesbeth ; Ege, Markus J. ; Gauderman, W. James ; Georges, Michel ; Gieger, Christian ; Gilliland, Frank ; Granell, Raquel ; Gui, Hongsheng ; Hansen, Torben ; Heinrich, Joachim ; Henderson, John ; Hernandez-Pacheco, Natalia ; Holt, Patrick ; Imboden, Medea ; Jaddoe, Vincent W.V. ; Jarvelin, Marjo Riitta ; Jarvis, Deborah L. ; Jensen, Kamilla K. ; Jónsdóttir, Ingileif ; Kabesch, Michael ; Bisgaard, Hans ; ,
in: Nature Genetics, vol: 50, issue: 9, pages: 1343

Type: Comment/debate (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41588-018-0197-6

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Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis

Waage, Johannes ; Standl, Marie ; Curtin, John A. ; Jessen, Leon E. ; Thorsen, Jonathan ; Tian, Chao ; Schoettler, Nathan ; Flores, Carlos ; Abdellaoui, Abdel ; Ahluwalia, Tarunveer S. ; Alves, Alexessander C. ; Amaral, Andre F.S. ; Antó, Josep M. ; Arnold, Andreas ; Barreto-Luis, Amalia ; Baurecht, Hansjörg ; van Beijsterveldt, Catharina E.M. ; Bleecker, Eugene R. ; Bonàs-Guarch, Sílvia ; Boomsma, Dorret I. ; Brix, Susanne ; Bunyavanich, Supinda ; Burchard, Esteban G. ; Chen, Zhanghua ; Curjuric, Ivan ; Custovic, Adnan ; Den Dekker, Herman T. ; Dharmage, Shyamali C. ; Dmitrieva, Julia ; Duijts, Liesbeth ; Ege, Markus J. ; Gauderman, W. James ; Georges, Michel ; Gieger, Christian ; Gilliland, Frank ; Granell, Raquel ; Gui, Hongsheng ; Hansen, Torben ; Heinrich, Joachim ; Henderson, John ; Hernandez-Pacheco, Natalia ; Holt, Patrick ; Imboden, Medea ; Jaddoe, Vincent W.V. ; Jarvelin, Marjo Riitta ; Jarvis, Deborah L. ; Jensen, Kamilla K. ; Jónsdóttir, Ingileif ; Kabesch, Michael ; Kaprio, Jaakko ; ,
in: Nature Genetics, vol: 50, issue: 8, pages: 1072-1080

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41588-018-0157-1

  PDF

Improved methods for predicting peptide binding affinity to MHC class II molecules

Jensen, Kamilla Kjærgaard ; Andreatta, Massimo ; Marcatili, Paolo ; Buus, Søren ; Greenbaum, Jason A ; Yan, Zhen ; Sette, Alessandro ; Peters, Bjoern ; Nielsen, Morten
in: Immunology, vol: 154, issue: 3, pages: 394-406

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: https://doi.org/10.1111/imm.12889

 

T cell receptor fingerprinting enables in-depth characterization of the interactions governing recognition of peptide-MHC complexes

Bentzen, Amalie Kai ; Such, Lina ; Jensen, Kamilla Kjærgaard ; Marquard, Andrea Marion ; Jessen, Leon Eyrich ; Miller, Natalie J. ; Church, Candice D ; Lyngaa, Rikke Birgitte ; Koelle, David M. ; Becker, Jürgen C. ; Linnemann, Carsten ; Schumacher, Ton N. M. ; Marcatili, Paolo ; Nghiem, Paul ; Nielsen, Morten ; Hadrup, Sine Reker
in: Nature Biotechnology, vol: 36, issue: 12, pages: 1191-1196

Type: Letter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/nbt.4303

2016
 

Automated Clustering Analysis of Immunoglobulin Sequences in Chronic Lymphocytic Leukemia Based on 3D Structural Descriptors

Marcatili, Paolo ; Mochament, Konstantinos ; Agathangelidis, Andreas ; Moschonas, Panagiotis ; Sutton, Lesley-Ann ; Yan, Xiao-Jie ; Bikos, Vasilis ; Vardi, Anna ; Chailyan, Anna ; Stavroyianni, Niki ; Jensen, Kamilla Kjærgaard ; Anagnostopoulos, Achilles ; Chiorazzi, Nicholas ; Belessi, Chrysoula ; Rosenquist, Richard ; Ghia, Paolo ; Stamatopoulos, Kostas ; Hadzidimitriou, Anastasia ; Tzovaras, Dimitrios
in: Blood, vol: 128, issue: 22, pages: 4365

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2016