DTU Sundhedsteknologi
DTU Bioinformatik
Henrik Nielsen

Henrik Nielsen

Lektor

Institut for Sundhedsteknologi

Danmarks Tekniske Universitet

Kemitorvet

Bygning 204, rum 248

2800 Kgs. Lyngby

Tlf.
Tlf.
Fax 45 93 15 85
E-mail henni@dtu.dk
ORCID 0000-0002-9412-9643
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Publikationer
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2019
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Detecting sequence signals in targeting peptides using deep learning

Armenteros, Jose Juan Almagro ; Salvatore, Marco ; Emanuelsson, Olof ; Winther, Ole ; Von Heijne, Gunnar ; Elofsson, Arne ; Nielsen, Henrik
in: Life Science Alliance, vol: 2, issue: 5

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.26508/lsa.201900429

  PDF

A Brief History of Protein Sorting Prediction

Nielsen, Henrik ; Tsirigos, Konstantinos D. ; Brunak, Søren ; von Heijne, Gunnar
in: Protein Journal, vol: 38, issue: 3, pages: 200-216

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1007/s10930-019-09838-3

 

Learning the language of life

Almagro Armenteros, Jose Juan ; Johansen, Alexander Rosenberg ; Nielsen, Henrik ; Winther, Ole
Presented at:
ISMB/ECCB 27th Conference on Intelligent Systems for Molecular Biology and the 18th European Conference on Computational Biology

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2019

  PDF

Predicting eukaryotic protein secretion without signals

Nielsen, Henrik ; Petsalaki, Eirini I. ; Zhao, Linlin ; Stühler, Kai
in: B B A - Proteins and Proteomics

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1016/j.bbapap.2018.11.011

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SignalP 5.0 improves signal peptide predictions using deep neural networks

Almagro Armenteros, Jose Juan ; Tsirigos, Konstantinos D. ; Sønderby, Casper Kaae ; Petersen, Thomas Nordahl ; Winther, Ole ; Brunak, Søren ; von Heijne, Gunnar ; Nielsen, Henrik
in: Nature Biotechnology, vol: 37, pages: 420-423

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1038/s41587-019-0036-z

2018
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The Bioinformatics and Biosemiotics of Protein Sorting

Nielsen, Henrik
Presented at:
18th Annual Biosemiotics Gathering

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2018

2017
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An introduction to Deep learning on biological sequence data - Examples and solutions

Jurtz, Vanessa Isabell ; Johansen, Alexander Rosenberg ; Nielsen, Morten ; Almagro Armenteros, Jose Juan ; Nielsen, Henrik ; Kaae Sønderby, Casper ; Winther, Ole ; Kaae Sønderby, Søren
in: Bioinformatics, vol: 33, issue: 22, pages: 3685-3690

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1093/bioinformatics/btx531

 

DeepLoc: prediction of protein subcellular localization using deep learning

Almagro Armenteros, Jose Juan ; Sønderby, Casper Kaae ; Sønderby, Søren Kaae ; Nielsen, Henrik ; Winther, Ole
in: Bioinformatics, vol: 33, issue: 21, pages: 3387-3395

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1093/bioinformatics/btx431

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How Much of the Human Genome is Functional?

Nielsen, Henrik
Presented at:
Seventeenth Annual Gatherings in Biosemiotics

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2017

  PDF

Predicting Secretory Proteins with SignalP

Nielsen, Henrik
in: Methods in Molecular Biology, vol: 1611, pages: 59-73

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1007/978-1-4939-7015-5_6